PGSC0003DMG400031288 (Solanum tuberosum)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
PGSC0003DMG400031288 T017066_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB15
M06696_2.00
Arabidopsis thaliana
TWTAWWATAWRGTWTW

WAWACYWTATWWTAWA
Dap-seq
OMalley et al.(2016)
AT1G04880_col_a
0.712 0.712
HMGB15
M06697_2.00
Arabidopsis thaliana
TATAWHATATRGTWT

AWACYATATDWTATA
Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400080358 ARID/BRIGHT 36 121
PGSC0003DMT400080358 Sox 265 332
PGSC0003DMT400080360 ARID/BRIGHT 36 121
PGSC0003DMT400080360 Sox 265 332

Links

Other ARID/BRIGHT,Sox family TFs
Other Solanum tuberosum TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAC59864 Xenopus laevis AAC59864 I 0.000
Aan_R015091 Calypte anna Aan_R015091 I 0.000
Afo_R014961 Aptenodytes forsteri Afo_R014961 I 0.000
Alligator_sinensis_CCG010361.1 Alligator sinensis Alligator_sinensis_CCG010361.1 I 0.000
Aqu1.219264 Amphimedon queenslandica Aqu1.219264 I 0.000
CapteG131091 Capitella teleta CapteG131091 I 0.000
CGI_10024271 Crassostrea gigas CGI_10024271 N 0.000
Cmyd_10017062 Chelonia mydas Cmyd_10017062 I 0.000
ENSACAG00000003119 Anolis carolinensis ENSACAG00000003119 I 0.000
ENSAMEG00000007114 Ailuropoda melanoleuca ENSAMEG00000007114 I 0.000
ENSAMXG00000000331 Astyanax mexicanus ENSAMXG00000000331 I 0.000
ENSAMXG00000019220 Astyanax mexicanus ENSAMXG00000019220 N 0.000
ENSAPLG00000006681 Anas platyrhynchos ENSAPLG00000006681 I 0.000
ENSBTAP00000021593-D1 Bos grunniens ENSBTAP00000021593-D1 I 0.000
ENSCPOG00000005302 Cavia porcellus ENSCPOG00000005302 I 0.000
ENSCSAG00000006853 Chlorocebus sabaeus ENSCSAG00000006853 I 0.000
ENSCSAG00000008358 Chlorocebus sabaeus ENSCSAG00000008358 I 0.000
ENSGACG00000010739 Gasterosteus aculeatus ENSGACG00000010739 I 0.000
ENSGALG00000026590 Gallus gallus ENSGALG00000026590 I 0.000
ENSGMOG00000002059 Gadus morhua ENSGMOG00000002059 I 0.000
ENSGMOG00000017987 Gadus morhua ENSGMOG00000017987 I 0.000
ENSLACG00000004995 Latimeria chalumnae ENSLACG00000004995 I 0.000
ENSLACG00000018298 Latimeria chalumnae ENSLACG00000018298 I 0.000
ENSLOCG00000006468 Lepisosteus oculatus ENSLOCG00000006468 I 0.000
ENSLOCG00000014806 Lepisosteus oculatus ENSLOCG00000014806 I 0.000
ENSMMUG00000000225 Macaca mulatta ENSMMUG00000000225 I 0.000
ENSMPUG00000009506 Mustela putorius furo ENSMPUG00000009506 I 0.000
ENSNLEG00000000826 Nomascus leucogenys ENSNLEG00000000826 I 0.000
ENSNLEG00000007555 Nomascus leucogenys ENSNLEG00000007555 I 0.000
ENSOARG00000012896 Ovis aries ENSOARG00000012896 I 0.000
ENSOARG00000016409 Ovis aries ENSOARG00000016409 I 0.000
ENSOGAG00000026529 Otolemur garnettii ENSOGAG00000026529 I 0.000
ENSONIG00000010668 Oreochromis niloticus ENSONIG00000010668 N 0.000
ENSONIG00000015310 Oreochromis niloticus ENSONIG00000015310 I 0.000
ENSP00000366330 Macaca fascicularis ENSP00000366330 I 0.000
ENSPANG00000025104 Papio anubis ENSPANG00000025104 I 0.000
ENSPFOG00000004556 Poecilia formosa ENSPFOG00000004556 I 0.000
ENSPFOG00000016517 Poecilia formosa ENSPFOG00000016517 N 0.000
ENSPPYG00000019284 Pongo abelii ENSPPYG00000019284 I 0.000
ENSPSIG00000009426 Pelodiscus sinensis ENSPSIG00000009426 I 0.000
ENSPSIG00000014849 Pelodiscus sinensis ENSPSIG00000014849 I 0.000
ENSSHAG00000011337 Sarcophilus harrisii ENSSHAG00000011337 I 0.000
ENSSTOG00000000238 Ictidomys tridecemlineatus ENSSTOG00000000238 I 0.000
ENSSTOG00000022758 Ictidomys tridecemlineatus ENSSTOG00000022758 I 0.000
ENSTSYG00000008257 Tarsius syrichta ENSTSYG00000008257 I 0.000
ENSXMAG00000003301 Xiphophorus maculatus ENSXMAG00000003301 I 0.000
ENSXMAG00000004532 Xiphophorus maculatus ENSXMAG00000004532 N 0.000
Gfo_R008822 Geospiza fortis Gfo_R008822 I 0.000
Klf13 Mus musculus ENSMUSG00000052040 I 0.000
klf13 Xenopus tropicalis XB-GENE-479837 I 0.000
KLF13 Echinops telfairi ENSETEG00000014330 I 0.000
KLF13 Pan troglodytes ENSPTRG00000006860 I 0.000
klf13 Takifugu rubripes ENSTRUG00000011759 I 0.000
KLF13 Taeniopygia guttata ENSTGUG00000005470 I 0.000
klf13 Oryzias latipes ENSORLG00000007542 I 0.000
klf13 Tetraodon nigroviridis ENSTNIG00000008397 I 0.000
KLF13 Sus scrofa ENSSSCG00000026006 I 0.000
KLF13 Homo sapiens ENSG00000169926 D 0.000
KLF13 Meleagris gallopavo ENSMGAG00000004699 I 0.000
KLF13 Monodelphis domestica ENSMODG00000011740 I 0.000
KLF13 Procavia capensis ENSPCAG00000009647 I 0.000
klf13 Danio rerio ENSDARG00000061368 I 0.000
KLF13 Callithrix jacchus ENSCJAG00000017617 I 0.000
klf9 Xenopus tropicalis XB-GENE-483889 I 0.000
KLF9 Callithrix jacchus ENSCJAG00000001575 I 0.000
KLF9 Tursiops truncatus ENSTTRG00000001149 I 0.000
KLF9 Equus caballus ENSECAG00000024925 I 0.000
KLF9 Sus scrofa ENSSSCG00000021646 I 0.000
KLF9 Dasypus novemcinctus ENSDNOG00000018839 I 0.000
KLF9 Bos taurus ENSBTAG00000016229 I 0.000
KLF9 Tupaia belangeri ENSTBEG00000007044 I 0.000
Klf9 Rattus norvegicus ENSRNOG00000014215 I 0.000
KLF9 Otolemur garnettii ENSOGAG00000030356 I 0.000
KLF9 Microcebus murinus ENSMICG00000001056 I 0.000
KLF9 Loxodonta africana ENSLAFG00000027506 I 0.000
KLF9 Oryctolagus cuniculus ENSOCUG00000006343 I 0.000
KLF9 Gorilla gorilla ENSGGOG00000025900 I 0.000
KLF9 Myotis lucifugus ENSMLUG00000002809 I 0.000
KLF9 Procavia capensis ENSPCAG00000003811 I 0.000
KLF9 Gallus gallus ENSGALG00000027374 I 0.000
KLF9 Monodelphis domestica ENSMODG00000002760 I 0.000
Klf9 Mus musculus ENSMUSG00000033863 D 0.000
KLF9 Pteropus vampyrus ENSPVAG00000005970 I 0.000
KLF9 Ornithorhynchus anatinus ENSOANG00000005024 I 0.000
KLF9 Homo sapiens ENSG00000119138 D 0.000
KLF9 Pan troglodytes ENSPTRG00000040619 I 0.000
klf9.L Xenopus laevis XB-GENE-865026 I 0.000
LotgiG126249 Lottia gigantea LotgiG126249 I 0.000
Myotis_brandtii_KLF9_10034438 Myotis brandtii Myotis_brandtii_KLF9_10034438 I 0.000
NEMVEDRAFT_v1g39461 Nematostella vectensis NEMVEDRAFT_v1g39461 I 0.000
Ogr16901 Ophisaurus gracilis Ogr16901 I 0.000
Ogr17781 Ophisaurus gracilis Ogr17781 I 0.000
Pvit_02178 Pogona vitticeps Pvit_02178 I 0.000
Pvit_17363 Pogona vitticeps Pvit_17363 I 0.000
Sakowv30030659m.g Saccoglossus kowalevskii Sakowv30030659m.g N 0.000
SPU_023727 Strongylocentrotus purpuratus SPU_023727 N 0.000
Tal_R011003 Tyto alba Tal_R011003 I 0.000
TC000837 Tribolium castaneum TC000837 I 0.000
TriadG27838 Trichoplax adhaerens TriadG27838 I 0.000
TriadG8990 Trichoplax adhaerens TriadG8990 N 0.000
zgc:153115 Gasterosteus aculeatus ENSGACG00000016005 I 0.000
zgc:153115 Takifugu rubripes ENSTRUG00000003801 I 0.000
zgc:153115 Tetraodon nigroviridis ENSTNIG00000007828 I 0.000
zgc:153115 Danio rerio ENSDARG00000069342 N 0.000