PGSC0003DMG400031288 (Solanum tuberosum)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
PGSC0003DMG400031288 T017066_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB15
M06696_2.00
Arabidopsis thaliana
TWTAWWATAWRGTWTW

WAWACYWTATWWTAWA
Dap-seq
OMalley et al.(2016)
AT1G04880_col_a
0.712 0.712
HMGB15
M06697_2.00
Arabidopsis thaliana
TATAWHATATRGTWT

AWACYATATDWTATA
Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400080358 ARID/BRIGHT 36 121
PGSC0003DMT400080358 Sox 265 332
PGSC0003DMT400080360 ARID/BRIGHT 36 121
PGSC0003DMT400080360 Sox 265 332

Links

Other ARID/BRIGHT,Sox family TFs
Other Solanum tuberosum TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00089p00097770 Amborella trichopoda AMTR_s00089p00097770 I 0.750
Aquca_034_00154 Aquilegia coerulea Aquca_034_00154 N 0.752
fgenesh2_kg.1__427__AT1G04880.1 Arabidopsis lyrata fgenesh2_kg.1__427__AT1G04880.1 I 0.712
HMGB15 Arabidopsis thaliana AT1G04880 D 0.712
Bostr.25219s0485 Boechera stricta Bostr.25219s0485 I 0.719
Bo8g115380 Brassica oleracea Bo8g115380 I 0.719
Bo5g004970 Brassica oleracea Bo5g004970 I 0.712
Bra032491 Brassica rapa Bra032491 I 0.719
Bra015358 Brassica rapa Bra015358 I 0.725
PK27727.1 Cannabis sativa PK27727.1 I 0.739
Cagra.1671s0107 Capsella grandiflora Cagra.1671s0107 I 0.719
Carubv10010835m.g Capsella rubella Carubv10010835m.g I 0.719
evm.TU.supercontig_1068.1 Carica papaya evm.TU.supercontig_1068.1 I 0.765
Ca_21617 Cicer arietinum Ca_21617 I 0.758
Cla003004 Citrullus lanatus Cla003004 I 0.754
Ciclev10005091m.g Citrus clementina Ciclev10005091m.g I 0.784
orange1.1g046368m.g Citrus sinensis orange1.1g046368m.g I 0.797
Cucsa.193910 Cucumis sativus Cucsa.193910 I 0.765
Eucgr.H00052 Eucalyptus grandis Eucgr.H00052 I 0.771
Thhalv10007631m.g Eutrema salsugineum Thhalv10007631m.g I 0.725
gene06664-v1.0-hybrid Fragaria vesca gene06664-v1.0-hybrid I 0.752
GLYMA20G38761 Glycine max GLYMA20G38761 I 0.745
GLYMA10G44041 Glycine max GLYMA10G44041 I 0.752
Gorai.005G130200 Gossypium raimondii Gorai.005G130200 I 0.770
Gorai.011G157600 Gossypium raimondii Gorai.011G157600 I 0.791
Lus10016671.g Linum usitatissimum Lus10016671.g I 0.739
Lus10007127.g Linum usitatissimum Lus10007127.g I 0.739
MDP0000307705 Malus domestica MDP0000307705 I 0.784
cassava14246.m1 Manihot esculenta cassava14246.m1 I 0.784
cassava27713.m1 Manihot esculenta cassava27713.m1 I 0.778
MTR_7g005970 Medicago truncatula MTR_7g005970 I 0.725
MTR_1g116180 Medicago truncatula MTR_1g116180 I 0.737
mgf005082m Mimulus guttatus mgf005082m N 0.752
GSMUA_Achr6G21080_001 Musa acuminata GSMUA_Achr6G21080_001 I 0.739
GSMUA_Achr8G28470_001 Musa acuminata GSMUA_Achr8G28470_001 I 0.732
POPTR_0001s32240 Populus trichocarpa POPTR_0001s32240 I 0.771
Pm009491 Prunus mume Pm009491 I 0.784
PRUPE_ppa026976mg Prunus persica PRUPE_ppa026976mg I 0.784
29904.m002943 Ricinus communis 29904.m002943 I 0.784
SapurV1A.0058s0580 Salix purpurea SapurV1A.0058s0580 I 0.791
SapurV1A.5889s0010 Salix purpurea SapurV1A.5889s0010 I 0.778
SapurV1A.1542s0040 Salix purpurea SapurV1A.1542s0040 I 0.771
Solyc09g091960.2 Solanum lycopersicum Solyc09g091960.2 I 0.948
TCM_020322 Theobroma cacao TCM_020322 I 0.797
VIT_05s0029g00130 Vitis vinifera VIT_05s0029g00130 I 0.804