POPTR_0005s26800 (Populus trichocarpa)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		POPTR_0005s26800 T017068_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB9
M06698_2.00 		Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW		 Dap-seq
OMalley et al.(2016)
At1g76110_col_a 		0.836 0.836
HMGB9
M06699_2.00 		Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT		 Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a 		0.836 0.836
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s26800.1 ARID/BRIGHT 32 116
POPTR_0005s26800.1 Sox 240 307

Links

Other ARID/BRIGHT,Sox family TFs
Other Populus trichocarpa TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0573s0150 Salix purpurea SapurV1A.0573s0150 I 0.980
TCM_034318 Theobroma cacao TCM_034318 I 0.908
Gorai.009G190400 Gossypium raimondii Gorai.009G190400 I 0.901
evm.TU.supercontig_26.248 Carica papaya evm.TU.supercontig_26.248 I 0.895
cassava21037.m1 Manihot esculenta cassava21037.m1 I 0.895
GLYMA04G02210 Glycine max GLYMA04G02210 I 0.888
30170.m014303 Ricinus communis 30170.m014303 I 0.882
Ciclev10001816m.g Citrus clementina Ciclev10001816m.g I 0.875
Cucsa.271870 Cucumis sativus Cucsa.271870 I 0.875
orange1.1g020305m.g Citrus sinensis orange1.1g020305m.g I 0.875
MTR_3g114920 Medicago truncatula MTR_3g114920 I 0.868
Ca_04857 Cicer arietinum Ca_04857 I 0.863
Eucgr.F03526 Eucalyptus grandis Eucgr.F03526 I 0.849
PK27175.1 Cannabis sativa PK27175.1 I 0.848
PRUPE_ppa009338mg Prunus persica PRUPE_ppa009338mg I 0.842
fgenesh2_kg.2__1891__AT1G76110.1 Arabidopsis lyrata fgenesh2_kg.2__1891__AT1G76110.1 I 0.842
Bostr.20129s0046 Boechera stricta Bostr.20129s0046 I 0.842
Carubv10020597m.g Capsella rubella Carubv10020597m.g I 0.836
Cagra.0799s0081 Capsella grandiflora Cagra.0799s0081 I 0.836
HMGB9 Arabidopsis thaliana AT1G76110 D 0.836
gene08596-v1.0-hybrid Fragaria vesca gene08596-v1.0-hybrid I 0.822
MDP0000204804 Malus domestica MDP0000204804 I 0.816
Thhalv10018826m.g Eutrema salsugineum Thhalv10018826m.g I 0.816
Bo6g120140 Brassica oleracea Bo6g120140 I 0.816
Lus10021228.g Linum usitatissimum Lus10021228.g I 0.809
Bra015787 Brassica rapa Bra015787 I 0.809
Pm006137 Prunus mume Pm006137 I 0.789
GSMUA_Achr3G00570_001 Musa acuminata GSMUA_Achr3G00570_001 I 0.743
VIT_18s0001g00660 Vitis vinifera VIT_18s0001g00660 I 0.739
Solyc12g094440.1 Solanum lycopersicum Solyc12g094440.1 I 0.724
PGSC0003DMG400029327 Solanum tuberosum PGSC0003DMG400029327 I 0.711
GSMUA_Achr8G34160_001 Musa acuminata GSMUA_Achr8G34160_001 I 0.704