POPTR_0011s17180 (Populus trichocarpa)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		POPTR_0011s17180 T017069_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s17180.1 ARID/BRIGHT 44 129
POPTR_0011s17180.1 Sox 244 311

Links

Other ARID/BRIGHT,Sox family TFs
Other Populus trichocarpa TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0338s0260 Salix purpurea SapurV1A.0338s0260 I 0.928
28657.m000391 Ricinus communis 28657.m000391 N 0.889
cassava30583.valid.m1 Manihot esculenta cassava30583.valid.m1 N 0.855
Pm000293 Prunus mume Pm000293 N 0.837
PRUPE_ppa008470mg Prunus persica PRUPE_ppa008470mg N 0.837
MDP0000257366 Malus domestica MDP0000257366 I 0.837
orange1.1g020460m.g Citrus sinensis orange1.1g020460m.g N 0.817
gene01438-v1.0-hybrid Fragaria vesca gene01438-v1.0-hybrid N 0.817
Ciclev10008919m.g Citrus clementina Ciclev10008919m.g N 0.817
TCM_030511 Theobroma cacao TCM_030511 I 0.810
Gorai.013G147900 Gossypium raimondii Gorai.013G147900 N 0.810
evm.TU.supercontig_12.68 Carica papaya evm.TU.supercontig_12.68 I 0.808
PK06884.1 Cannabis sativa PK06884.1 N 0.797
MDP0000167232 Malus domestica MDP0000167232 N 0.783
VIT_19s0015g01770 Vitis vinifera VIT_19s0015g01770 N 0.778
Ca_20521 Cicer arietinum Ca_20521 N 0.722
AMTR_s00061p00067260 Amborella trichopoda AMTR_s00061p00067260 N 0.712
GLYMA04G12530 Glycine max GLYMA04G12530 N 0.711
chr3.CM0047.510.nc Lotus japonicus chr3.CM0047.510.nc N 0.702
mgf009259m Mimulus guttatus mgf009259m N 0.702