CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si017168m.g
(
Setaria italica
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Si017168m.g
T017078_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si017168m
ARID/BRIGHT
62
147
DAARFRAVLERLHAHMGTRLKVPIIGGKDLDLHQLYKEVTSRGGIDKVKAENRWREVTASFVFPATATNASFMLKKYYMSLLYHFE
Si017168m
Sox
272
339
PKPNRSGYNFFFQDQHRILKPQYPGQDRLISKMIGERWNNLSPEDKAVYQERGVQDKERYRTQLAAYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Setaria italica
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Aa02269
Panicum virgatum
Pavir.Aa02269
N
0.986
Pavir.Ab01767
Panicum virgatum
Pavir.Ab01767
N
0.967
Sb04g017850
Sorghum bicolor
Sb04g017850
N
0.961
GRMZM2G024976
Zea mays
GRMZM2G024976
N
0.954
Traes_6AS_A465E600A
Triticum aestivum
Traes_6AS_A465E600A
N
0.935
BRADI3G43310
Brachypodium distachyon
BRADI3G43310
N
0.935
MLOC_42821
Hordeum vulgare
MLOC_42821
I
0.928
ONIVA02G17640
Oryza nivara
ONIVA02G17640
N
0.899
OB0121G10030
Oryza brachyantha
OB0121G10030
N
0.899
OPUNC02G14620
Oryza punctata
OPUNC02G14620
N
0.889
ORUFI02G16870
Oryza rufipogon
ORUFI02G16870
N
0.876
OS02G0469900
Oryza sativa
OS02G0469900
N
0.876
OMERI02G15910
Oryza meridionalis
OMERI02G15910
N
0.876
OBART02G16380
Oryza barthii
OBART02G16380
N
0.876
BGIOSGA008185
Oryza indica
BGIOSGA008185
N
0.876
OGLUM02G16420
Oryza glumaepatula
OGLUM02G16420
N
0.876
OLONG_013998
Oryza longistaminata
OLONG_013998
N
0.876
LPERR02G13140
Leersia perrieri
LPERR02G13140
I
0.810
TRIUR3_18598
Triticum urartu
TRIUR3_18598
N
0.785