CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc12g016190.1
(
Solanum lycopersicum
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Solyc12g016190.1
T017081_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc12g016190.1.1
ARID/BRIGHT
42
127
NSQLFWNKLQKFSASLQTKFQIPLVAGTPLDLHRLFVEVTSRGGIEKVIRERKWGEVKGIFRFPSSVTNASFVLRKHYLSMLYHFE
Solyc12g016190.1.1
Sox
242
309
PKPNRSGYNFFFAEHYATLKPSYQGQERAISKRIGILWSRLTEAEKQVYQEKGARDKERYRAEMLEYQ
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Solanum lycopersicum
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene01438-v1.0-hybrid
Fragaria vesca
gene01438-v1.0-hybrid
N
0.712
Pm000293
Prunus mume
Pm000293
N
0.712
PRUPE_ppa008470mg
Prunus persica
PRUPE_ppa008470mg
N
0.712
GLYMA06G48010
Glycine max
GLYMA06G48010
N
0.711
MDP0000257366
Malus domestica
MDP0000257366
I
0.706