CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_030511
(
Theobroma cacao
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
TCM_030511
T017086_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB10
M06700_2.00
Arabidopsis thaliana
TWATAA
TTATWA
Dap-seq
OMalley et al.(2016)
At3g13350_col_a
0.712
0.712
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY11840
ARID/BRIGHT
34
119
SSDLFWEKLKAFHKSLGKKFKVPVVGGKALDLHQLFTEVTSRGGLEKVIKDRRWKEVIVVFRFPTTITSASFVLRKYYLSLLYHFE
EOY11840
Sox
235
302
PKSNRSGYNFFFAEHYTQLKPMYYGQEKAISKRIGHLWSNLTEAEKQVYQEKGMKDKERYRTEMLEYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Theobroma cacao
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.013G147900
Gossypium raimondii
Gorai.013G147900
N
0.895
orange1.1g020460m.g
Citrus sinensis
orange1.1g020460m.g
N
0.863
Ciclev10008919m.g
Citrus clementina
Ciclev10008919m.g
N
0.863
Pm000293
Prunus mume
Pm000293
N
0.856
PRUPE_ppa008470mg
Prunus persica
PRUPE_ppa008470mg
N
0.856
MDP0000257366
Malus domestica
MDP0000257366
I
0.837
cassava30583.valid.m1
Manihot esculenta
cassava30583.valid.m1
N
0.836
28657.m000391
Ricinus communis
28657.m000391
N
0.817
POPTR_0011s17180
Populus trichocarpa
POPTR_0011s17180
N
0.810
gene01438-v1.0-hybrid
Fragaria vesca
gene01438-v1.0-hybrid
N
0.804
evm.TU.supercontig_12.68
Carica papaya
evm.TU.supercontig_12.68
I
0.797
PK06884.1
Cannabis sativa
PK06884.1
N
0.797
SapurV1A.0338s0260
Salix purpurea
SapurV1A.0338s0260
I
0.778
VIT_19s0015g01770
Vitis vinifera
VIT_19s0015g01770
N
0.765
MDP0000167232
Malus domestica
MDP0000167232
N
0.743
Aquca_093_00004
Aquilegia coerulea
Aquca_093_00004
N
0.723
GLYMA04G12530
Glycine max
GLYMA04G12530
N
0.717
Bostr.3640s0117
Boechera stricta
Bostr.3640s0117
I
0.714
AMTR_s00061p00067260
Amborella trichopoda
AMTR_s00061p00067260
N
0.712
HMGB10
Arabidopsis thaliana
AT3G13350
D
0.708
chr3.CM0047.510.nc
Lotus japonicus
chr3.CM0047.510.nc
N
0.706
Cagra.0690s0033
Capsella grandiflora
Cagra.0690s0033
I
0.706
Carubv10014108m.g
Capsella rubella
Carubv10014108m.g
I
0.706