CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_034318
(
Theobroma cacao
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
TCM_034318
T017087_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.854
0.854
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.854
0.854
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY15158
ARID/BRIGHT
41
124
IVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYE
EOY15158
Sox
253
320
PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKDKERYKRELKEYK
EOY15159
ARID/BRIGHT
41
124
IVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYE
EOY15159
Sox
247
314
PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKDKERYKRELKEYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Theobroma cacao
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.009G190400
Gossypium raimondii
Gorai.009G190400
I
0.974
orange1.1g020305m.g
Citrus sinensis
orange1.1g020305m.g
I
0.934
Ciclev10001816m.g
Citrus clementina
Ciclev10001816m.g
I
0.934
Cucsa.271870
Cucumis sativus
Cucsa.271870
I
0.927
evm.TU.supercontig_26.248
Carica papaya
evm.TU.supercontig_26.248
I
0.922
POPTR_0005s26800
Populus trichocarpa
POPTR_0005s26800
I
0.908
cassava21037.m1
Manihot esculenta
cassava21037.m1
I
0.902
30170.m014303
Ricinus communis
30170.m014303
I
0.895
SapurV1A.0573s0150
Salix purpurea
SapurV1A.0573s0150
I
0.895
GLYMA04G02210
Glycine max
GLYMA04G02210
I
0.889
PK27175.1
Cannabis sativa
PK27175.1
I
0.887
Ca_04857
Cicer arietinum
Ca_04857
I
0.882
MTR_3g114920
Medicago truncatula
MTR_3g114920
I
0.882
Eucgr.F03526
Eucalyptus grandis
Eucgr.F03526
I
0.881
PRUPE_ppa009338mg
Prunus persica
PRUPE_ppa009338mg
I
0.855
MDP0000204804
Malus domestica
MDP0000204804
I
0.854
Bostr.20129s0046
Boechera stricta
Bostr.20129s0046
I
0.850
fgenesh2_kg.2__1891__AT1G76110.1
Arabidopsis lyrata
fgenesh2_kg.2__1891__AT1G76110.1
I
0.850
gene08596-v1.0-hybrid
Fragaria vesca
gene08596-v1.0-hybrid
I
0.849
Pm006137
Prunus mume
Pm006137
I
0.848
Cagra.0799s0081
Capsella grandiflora
Cagra.0799s0081
I
0.843
HMGB9
Arabidopsis thaliana
AT1G76110
D
0.843
Carubv10020597m.g
Capsella rubella
Carubv10020597m.g
I
0.843
Thhalv10018826m.g
Eutrema salsugineum
Thhalv10018826m.g
I
0.842
Lus10021228.g
Linum usitatissimum
Lus10021228.g
I
0.830
Bra015787
Brassica rapa
Bra015787
I
0.822
Bo6g120140
Brassica oleracea
Bo6g120140
I
0.822
PGSC0003DMG400029327
Solanum tuberosum
PGSC0003DMG400029327
I
0.805
GSMUA_Achr3G00570_001
Musa acuminata
GSMUA_Achr3G00570_001
I
0.771
Solyc12g094440.1
Solanum lycopersicum
Solyc12g094440.1
I
0.747
VIT_18s0001g00660
Vitis vinifera
VIT_18s0001g00660
I
0.739
GSMUA_Achr8G34160_001
Musa acuminata
GSMUA_Achr8G34160_001
I
0.725
GSMUA_Achr1G14960_001
Musa acuminata
GSMUA_Achr1G14960_001
I
0.706