CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_034318
(
Theobroma cacao
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
TCM_034318
T017087_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.854
0.854
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.854
0.854
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY15158
ARID/BRIGHT
41
124
IVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYE
EOY15158
Sox
253
320
PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKDKERYKRELKEYK
EOY15159
ARID/BRIGHT
41
124
IVFWDTLRRFHFIMGTKFMIPVIGGKELDLHVLYVEATKRGGYEKVVAEKKWREVGSVFRFSPTTTSASFVLRKHYFSLLYHYE
EOY15159
Sox
247
314
PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNSLGPEERMVYQNIGLKDKERYKRELKEYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Theobroma cacao
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy