CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ca_20521
(
Cicer arietinum
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Ca_20521
T017095_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ca_20521
ARID/BRIGHT
41
126
DPNLFHQKLQSFHDSFGTKLKIPTIGGKPLDLHHLFVEVTSRGGVEKVIVDRKWKEVIMTFKFRDTITSASFMVRRYYLSLLYHFE
Ca_20521
Sox
239
306
PKSNRSGYNFFFAENYARLKPSFHGQERAIGKKIGFLWSNLTDAERQVYQEKGLRDKERYRIEMLKYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Cicer arietinum
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
chr3.CM0047.510.nc
Lotus japonicus
chr3.CM0047.510.nc
N
0.801
MTR_3g009890
Medicago truncatula
MTR_3g009890
N
0.791
GLYMA06G48010
Glycine max
GLYMA06G48010
N
0.783
GLYMA04G12530
Glycine max
GLYMA04G12530
N
0.763
Pm000293
Prunus mume
Pm000293
N
0.745
PRUPE_ppa008470mg
Prunus persica
PRUPE_ppa008470mg
N
0.745
MDP0000257366
Malus domestica
MDP0000257366
I
0.732
evm.TU.supercontig_12.68
Carica papaya
evm.TU.supercontig_12.68
I
0.728
POPTR_0011s17180
Populus trichocarpa
POPTR_0011s17180
N
0.722
cassava30583.valid.m1
Manihot esculenta
cassava30583.valid.m1
N
0.717
PK06884.1
Cannabis sativa
PK06884.1
N
0.712
28657.m000391
Ricinus communis
28657.m000391
N
0.709
VIT_19s0015g01770
Vitis vinifera
VIT_19s0015g01770
N
0.706
orange1.1g020460m.g
Citrus sinensis
orange1.1g020460m.g
N
0.706
Ciclev10008919m.g
Citrus clementina
Ciclev10008919m.g
N
0.706
mgf009259m
Mimulus guttatus
mgf009259m
N
0.702