CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm000293
(
Prunus mume
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Pm000293
T017098_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm000293
ARID/BRIGHT
58
143
SSDLFWEKLKEFHDSFRTKFVIPTVGGKALDLHLLFVEVTSRGGLEKVIRDRKWKEVIVVFNFPTTITSASFVLRKYYSSLLYHFE
Pm000293
Sox
255
322
PKSNRSGYNFFFAEHYARLKPLYYGQERAISKKIGFLWNNLTEAEKQVYQEKGMQDKERYRTEMLEYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Prunus mume
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa008470mg
Prunus persica
PRUPE_ppa008470mg
N
1.000
MDP0000257366
Malus domestica
MDP0000257366
I
0.941
gene01438-v1.0-hybrid
Fragaria vesca
gene01438-v1.0-hybrid
N
0.869
TCM_030511
Theobroma cacao
TCM_030511
I
0.856
MDP0000167232
Malus domestica
MDP0000167232
N
0.855
Ciclev10008919m.g
Citrus clementina
Ciclev10008919m.g
N
0.850
orange1.1g020460m.g
Citrus sinensis
orange1.1g020460m.g
N
0.850
PK06884.1
Cannabis sativa
PK06884.1
N
0.843
28657.m000391
Ricinus communis
28657.m000391
N
0.843
cassava30583.valid.m1
Manihot esculenta
cassava30583.valid.m1
N
0.842
POPTR_0011s17180
Populus trichocarpa
POPTR_0011s17180
N
0.837
VIT_19s0015g01770
Vitis vinifera
VIT_19s0015g01770
N
0.830
Gorai.013G147900
Gossypium raimondii
Gorai.013G147900
N
0.824
evm.TU.supercontig_12.68
Carica papaya
evm.TU.supercontig_12.68
I
0.791
SapurV1A.0338s0260
Salix purpurea
SapurV1A.0338s0260
I
0.778
Ca_20521
Cicer arietinum
Ca_20521
N
0.745
Aquca_093_00004
Aquilegia coerulea
Aquca_093_00004
N
0.738
AMTR_s00061p00067260
Amborella trichopoda
AMTR_s00061p00067260
N
0.732
GLYMA04G12530
Glycine max
GLYMA04G12530
N
0.730
GLYMA06G48010
Glycine max
GLYMA06G48010
N
0.724
Solyc12g016190.1
Solanum lycopersicum
Solyc12g016190.1
N
0.712