28657.m000391 (Ricinus communis)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
28657.m000391 T017102_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
28657.m000391 ARID/BRIGHT 43 128
28657.m000391 Sox 238 308

Links

Other ARID/BRIGHT,Sox family TFs
Other Ricinus communis TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0011s17180 Populus trichocarpa POPTR_0011s17180 N 0.889
cassava30583.valid.m1 Manihot esculenta cassava30583.valid.m1 N 0.875
MDP0000257366 Malus domestica MDP0000257366 I 0.850
Ciclev10008919m.g Citrus clementina Ciclev10008919m.g N 0.843
PRUPE_ppa008470mg Prunus persica PRUPE_ppa008470mg N 0.843
Pm000293 Prunus mume Pm000293 N 0.843
orange1.1g020460m.g Citrus sinensis orange1.1g020460m.g N 0.843
gene01438-v1.0-hybrid Fragaria vesca gene01438-v1.0-hybrid N 0.837
SapurV1A.0338s0260 Salix purpurea SapurV1A.0338s0260 I 0.830
Gorai.013G147900 Gossypium raimondii Gorai.013G147900 N 0.817
TCM_030511 Theobroma cacao TCM_030511 I 0.817
PK06884.1 Cannabis sativa PK06884.1 N 0.810
VIT_19s0015g01770 Vitis vinifera VIT_19s0015g01770 N 0.791
evm.TU.supercontig_12.68 Carica papaya evm.TU.supercontig_12.68 I 0.788
MDP0000167232 Malus domestica MDP0000167232 N 0.783
AMTR_s00061p00067260 Amborella trichopoda AMTR_s00061p00067260 N 0.752
Aquca_093_00004 Aquilegia coerulea Aquca_093_00004 N 0.715
chr3.CM0047.510.nc Lotus japonicus chr3.CM0047.510.nc N 0.715
Ca_20521 Cicer arietinum Ca_20521 N 0.709
AMTR_s00089p00097770 Amborella trichopoda AMTR_s00089p00097770 I 0.704
mgf009259m Mimulus guttatus mgf009259m N 0.702