cassava21037.m1 (Manihot esculenta)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
cassava21037.m1 T017106_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN

NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.843 0.843
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD

HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.843 0.843
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava21037.m1 ARID/BRIGHT 31 116
cassava21037.m1 Sox 211 278

Links

Other ARID/BRIGHT,Sox family TFs
Other Manihot esculenta TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30170.m014303 Ricinus communis 30170.m014303 I 0.954
evm.TU.supercontig_26.248 Carica papaya evm.TU.supercontig_26.248 I 0.908
TCM_034318 Theobroma cacao TCM_034318 I 0.902
Gorai.009G190400 Gossypium raimondii Gorai.009G190400 I 0.895
POPTR_0005s26800 Populus trichocarpa POPTR_0005s26800 I 0.895
Ciclev10001816m.g Citrus clementina Ciclev10001816m.g I 0.889
orange1.1g020305m.g Citrus sinensis orange1.1g020305m.g I 0.889
SapurV1A.0573s0150 Salix purpurea SapurV1A.0573s0150 I 0.876
Cucsa.271870 Cucumis sativus Cucsa.271870 I 0.874
Ca_04857 Cicer arietinum Ca_04857 I 0.869
Bostr.20129s0046 Boechera stricta Bostr.20129s0046 I 0.863
Carubv10020597m.g Capsella rubella Carubv10020597m.g I 0.863
GLYMA04G02210 Glycine max GLYMA04G02210 I 0.863
Cagra.0799s0081 Capsella grandiflora Cagra.0799s0081 I 0.863
MTR_3g114920 Medicago truncatula MTR_3g114920 I 0.863
Lus10021228.g Linum usitatissimum Lus10021228.g I 0.856
PRUPE_ppa009338mg Prunus persica PRUPE_ppa009338mg I 0.856
fgenesh2_kg.2__1891__AT1G76110.1 Arabidopsis lyrata fgenesh2_kg.2__1891__AT1G76110.1 I 0.856
Bo6g120140 Brassica oleracea Bo6g120140 I 0.849
PK27175.1 Cannabis sativa PK27175.1 I 0.848
Thhalv10018826m.g Eutrema salsugineum Thhalv10018826m.g I 0.843
HMGB9 Arabidopsis thaliana AT1G76110 D 0.843
Bra015787 Brassica rapa Bra015787 I 0.837
Eucgr.F03526 Eucalyptus grandis Eucgr.F03526 I 0.824
MDP0000204804 Malus domestica MDP0000204804 I 0.817
gene08596-v1.0-hybrid Fragaria vesca gene08596-v1.0-hybrid I 0.810
Pm006137 Prunus mume Pm006137 I 0.810
Solyc12g094440.1 Solanum lycopersicum Solyc12g094440.1 I 0.745
PGSC0003DMG400029327 Solanum tuberosum PGSC0003DMG400029327 I 0.732
VIT_18s0001g00660 Vitis vinifera VIT_18s0001g00660 I 0.732
GSMUA_Achr3G00570_001 Musa acuminata GSMUA_Achr3G00570_001 I 0.732
Lus10005636.g Linum usitatissimum Lus10005636.g N 0.730
GSMUA_Achr8G34160_001 Musa acuminata GSMUA_Achr8G34160_001 I 0.725
GSMUA_Achr1G14960_001 Musa acuminata GSMUA_Achr1G14960_001 I 0.712
mgf019342m Mimulus guttatus mgf019342m N 0.706