cassava27713.m1 (Manihot esculenta)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		cassava27713.m1 T017107_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB15
M06696_2.00 		Arabidopsis thaliana
TWTAWWATAWRGTWTW
WAWACYWTATWWTAWA		 Dap-seq
OMalley et al.(2016)
AT1G04880_col_a 		0.771 0.771
HMGB15
M06697_2.00 		Arabidopsis thaliana
TATAWHATATRGTWT
AWACYATATDWTATA		 Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava27713.m1 ARID/BRIGHT 47 132
cassava27713.m1 Sox 235 302

Links

Other ARID/BRIGHT,Sox family TFs
Other Manihot esculenta TFs

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46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action