Cucsa.193910 (Cucumis sativus)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		Cucsa.193910 T017109_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB15
M06696_2.00 		Arabidopsis thaliana
TWTAWWATAWRGTWTW
WAWACYWTATWWTAWA		 Dap-seq
OMalley et al.(2016)
AT1G04880_col_a 		0.765 0.765
HMGB15
M06697_2.00 		Arabidopsis thaliana
TATAWHATATRGTWT
AWACYATATDWTATA		 Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a 		0.765 0.765
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.193910.1 ARID/BRIGHT 125 210
Cucsa.193910.1 Sox 357 424
Cucsa.193910.2 ARID/BRIGHT 118 203
Cucsa.193910.2 Sox 350 417
Cucsa.193910.3 ARID/BRIGHT 92 177
Cucsa.193910.3 Sox 324 391
Cucsa.193910.4 ARID/BRIGHT 55 140
Cucsa.193910.4 Sox 287 354

Links

Other ARID/BRIGHT,Sox family TFs
Other Cucumis sativus TFs

Invalid Input OrderBy

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action