Cagra.0690s0033 (Capsella grandiflora)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		Cagra.0690s0033 T017123_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB10
M06700_2.00 		Arabidopsis thaliana
TWATAA
TTATWA		 Dap-seq
OMalley et al.(2016)
At3g13350_col_a 		0.942 0.942
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0690s0033.1.p ARID/BRIGHT 41 126
Cagra.0690s0033.1.p Sox 237 304

Links

Other ARID/BRIGHT,Sox family TFs
Other Capsella grandiflora TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10014108m.g Capsella rubella Carubv10014108m.g I 1.000
Bostr.3640s0117 Boechera stricta Bostr.3640s0117 I 0.942
HMGB10 Arabidopsis thaliana AT3G13350 D 0.942
fgenesh2_kg.3__1419__AT3G13350.1 Arabidopsis lyrata fgenesh2_kg.3__1419__AT3G13350.1 I 0.922
Thhalv10021143m.g Eutrema salsugineum Thhalv10021143m.g I 0.830
Bo5g132600 Brassica oleracea Bo5g132600 I 0.760
Bra034683 Brassica rapa Bra034683 I 0.758
evm.TU.supercontig_12.68 Carica papaya evm.TU.supercontig_12.68 I 0.722
MDP0000257366 Malus domestica MDP0000257366 I 0.712
TCM_030511 Theobroma cacao TCM_030511 I 0.706