CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10010835m.g
(
Capsella rubella
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Carubv10010835m.g
T017129_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB15
M06696_2.00
Arabidopsis thaliana
TWTAWWATAWRGTWTW
WAWACYWTATWWTAWA
Dap-seq
OMalley et al.(2016)
AT1G04880_col_a
0.954
0.954
HMGB15
M06697_2.00
Arabidopsis thaliana
TATAWHATATRGTWT
AWACYATATDWTATA
Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a
0.954
0.954
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10010835m
ARID/BRIGHT
31
116
DPRLFMSSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYE
Carubv10010835m
Sox
263
330
PKPNRSGYNFFFAEQHARLKPLYPGKDRDISRMIGELWNKLNEEEKSVYQGKAMEDKERYRVEMEDYN
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Capsella rubella
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy