Carubv10014108m.g (Capsella rubella)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		Carubv10014108m.g T017132_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB10
M06700_2.00 		Arabidopsis thaliana
TWATAA
TTATWA		 Dap-seq
OMalley et al.(2016)
At3g13350_col_a 		0.942 0.942
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014108m ARID/BRIGHT 61 146
Carubv10014108m Sox 257 324

Links

Other ARID/BRIGHT,Sox family TFs
Other Capsella rubella TFs

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10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action