Carubv10020597m.g (Capsella rubella)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Carubv10020597m.g T017133_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN

NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.967 0.967
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD

HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.967 0.967
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020597m ARID/BRIGHT 41 126
Carubv10020597m Sox 259 326

Links

Other ARID/BRIGHT,Sox family TFs
Other Capsella rubella TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30170.m014303 Ricinus communis 30170.m014303 I 0.849
HMGB9 Arabidopsis thaliana AT1G76110 D 0.967
Bo6g120140 Brassica oleracea Bo6g120140 I 0.941
Bostr.20129s0046 Boechera stricta Bostr.20129s0046 I 0.993
Bra015787 Brassica rapa Bra015787 I 0.934
Cagra.0799s0081 Capsella grandiflora Cagra.0799s0081 I 1.000
cassava21037.m1 Manihot esculenta cassava21037.m1 I 0.863
Ca_04857 Cicer arietinum Ca_04857 I 0.830
Ciclev10001816m.g Citrus clementina Ciclev10001816m.g I 0.856
Cucsa.271870 Cucumis sativus Cucsa.271870 I 0.861
Eucgr.F03526 Eucalyptus grandis Eucgr.F03526 I 0.813
evm.TU.supercontig_26.248 Carica papaya evm.TU.supercontig_26.248 I 0.843
fgenesh2_kg.2__1891__AT1G76110.1 Arabidopsis lyrata fgenesh2_kg.2__1891__AT1G76110.1 I 0.980
gene08596-v1.0-hybrid Fragaria vesca gene08596-v1.0-hybrid I 0.816
GLYMA04G02210 Glycine max GLYMA04G02210 I 0.830
Gorai.009G190400 Gossypium raimondii Gorai.009G190400 I 0.848
GSMUA_Achr1G14960_001 Musa acuminata GSMUA_Achr1G14960_001 I 0.719
GSMUA_Achr3G00570_001 Musa acuminata GSMUA_Achr3G00570_001 I 0.739
GSMUA_Achr8G34160_001 Musa acuminata GSMUA_Achr8G34160_001 I 0.732
Lus10005636.g Linum usitatissimum Lus10005636.g N 0.703
Lus10021228.g Linum usitatissimum Lus10021228.g I 0.837
MDP0000204804 Malus domestica MDP0000204804 I 0.797
mgf019342m Mimulus guttatus mgf019342m N 0.706
MTR_3g114920 Medicago truncatula MTR_3g114920 I 0.843
orange1.1g020305m.g Citrus sinensis orange1.1g020305m.g I 0.870
PGSC0003DMG400029327 Solanum tuberosum PGSC0003DMG400029327 I 0.752
PK27175.1 Cannabis sativa PK27175.1 I 0.841
Pm006137 Prunus mume Pm006137 I 0.821
POPTR_0005s26800 Populus trichocarpa POPTR_0005s26800 I 0.836
PRUPE_ppa009338mg Prunus persica PRUPE_ppa009338mg I 0.822
SapurV1A.0573s0150 Salix purpurea SapurV1A.0573s0150 I 0.842
Solyc12g094440.1 Solanum lycopersicum Solyc12g094440.1 I 0.701
TCM_034318 Theobroma cacao TCM_034318 I 0.843
Thhalv10018826m.g Eutrema salsugineum Thhalv10018826m.g I 0.941
VIT_18s0001g00660 Vitis vinifera VIT_18s0001g00660 I 0.725