Carubv10020597m.g (Capsella rubella)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Carubv10020597m.g T017133_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN

NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.967 0.967
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD

HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.967 0.967
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020597m ARID/BRIGHT 41 126
Carubv10020597m Sox 259 326

Links

Other ARID/BRIGHT,Sox family TFs
Other Capsella rubella TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000011267 Ailuropoda melanoleuca ENSAMEG00000011267 I 0.000
ENSBTAP00000024080-D1 Bos grunniens ENSBTAP00000024080-D1 I 0.000
ENSCSAG00000007689 Chlorocebus sabaeus ENSCSAG00000007689 I 0.000
ENSEEUG00000003860 Erinaceus europaeus ENSEEUG00000003860 I 0.000
ENSETEG00000009064 Echinops telfairi ENSETEG00000009064 I 0.000
ENSFCAG00000024967 Felis catus ENSFCAG00000024967 I 0.000
ENSLAFG00000017131 Loxodonta africana ENSLAFG00000017131 I 0.000
ENSMPUG00000012654 Mustela putorius furo ENSMPUG00000012654 I 0.000
ENSNLEG00000002174 Nomascus leucogenys ENSNLEG00000002174 I 0.000
ENSOARG00000011892 Ovis aries ENSOARG00000011892 I 0.000
ENSP00000339585 Macaca fascicularis ENSP00000339585 I 0.000
ENSPANG00000012789 Papio anubis ENSPANG00000012789 I 0.000
ENSPPYG00000020749 Pongo abelii ENSPPYG00000020749 I 0.000
ENSSTOG00000024213 Ictidomys tridecemlineatus ENSSTOG00000024213 I 0.000
Myotis_brandtii_ZNF449_10001399 Myotis brandtii Myotis_brandtii_ZNF449_10001399 I 0.000
Zfp449 Mus musculus ENSMUSG00000073176 I 0.000
Zfp449 Dipodomys ordii ENSDORG00000003522 I 0.000
Zfp449 Rattus norvegicus ENSRNOG00000050562 I 0.000
ZNF449 Bos taurus ENSBTAG00000018090 I 0.000
ZNF449 Canis familiaris ENSCAFG00000018905 I 0.000
ZNF449 Vicugna pacos ENSVPAG00000002342 I 0.000
ZNF449 Tursiops truncatus ENSTTRG00000010555 I 0.000
ZNF449 Callithrix jacchus ENSCJAG00000014517 I 0.000
ZNF449 Sus scrofa ENSSSCG00000012691 I 0.000
ZNF449 Pteropus vampyrus ENSPVAG00000006757 I 0.000
ZNF449 Pan troglodytes ENSPTRG00000022299 I 0.000
ZNF449 Equus caballus ENSECAG00000003581 I 0.000
ZNF449 Otolemur garnettii ENSOGAG00000003684 I 0.000
ZNF449 Oryctolagus cuniculus ENSOCUG00000014649 I 0.000
ZNF449 Homo sapiens ENSG00000173275 D 0.000
ZNF449 Gorilla gorilla ENSGGOG00000000032 I 0.000
ZNF449 Microcebus murinus ENSMICG00000003164 I 0.000
ZNF449 Macaca mulatta ENSMMUG00000008108 I 0.000