CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.F03526
(
Eucalyptus grandis
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Eucgr.F03526
T017138_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.797
0.797
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.797
0.797
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.F03526.1
ARID/BRIGHT
30
115
DHVLFWDTLRRFHFVMGTKFMVPVIGGKDLDLHVLYLEVTGKGGYEKVVAEKKWREVSNVFRFSPTTTSASFVLKKHYFSFLYHYE
Eucgr.F03526.1
Sox
239
306
PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGQSWTKLGPEERMVYQKIGLKDKERYKRELQEYR
Eucgr.F03526.2
ARID/BRIGHT
1
66
MVPVIGGKDLDLHVLYLEVTGKGGYEKVVAEKKWREVSNVFRFSPTTTSASFVLKKHYFSFLYHYE
Eucgr.F03526.2
Sox
190
257
PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGQSWTKLGPEERMVYQKIGLKDKERYKRELQEYR
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Eucalyptus grandis
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy