evm.TU.supercontig_12.68 (Carica papaya)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box) 		IPR001606
IPR000910 		evm.TU.supercontig_12.68 T017141_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB10
M06700_2.00 		Arabidopsis thaliana
TWATAA
TTATWA		 Dap-seq
OMalley et al.(2016)
At3g13350_col_a 		0.728 0.728
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_12.68 ARID/BRIGHT 46 131
evm.model.supercontig_12.68 Sox 237 304

Links

Other ARID/BRIGHT,Sox family TFs
Other Carica papaya TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0011s17180 Populus trichocarpa POPTR_0011s17180 N 0.808
TCM_030511 Theobroma cacao TCM_030511 I 0.797
Pm000293 Prunus mume Pm000293 N 0.791
PRUPE_ppa008470mg Prunus persica PRUPE_ppa008470mg N 0.791
Ciclev10008919m.g Citrus clementina Ciclev10008919m.g N 0.791
orange1.1g020460m.g Citrus sinensis orange1.1g020460m.g N 0.791
MDP0000257366 Malus domestica MDP0000257366 I 0.791
cassava30583.valid.m1 Manihot esculenta cassava30583.valid.m1 N 0.789
Gorai.013G147900 Gossypium raimondii Gorai.013G147900 N 0.788
28657.m000391 Ricinus communis 28657.m000391 N 0.788
gene01438-v1.0-hybrid Fragaria vesca gene01438-v1.0-hybrid N 0.778
PK06884.1 Cannabis sativa PK06884.1 N 0.775
SapurV1A.0338s0260 Salix purpurea SapurV1A.0338s0260 I 0.768
mgf009259m Mimulus guttatus mgf009259m N 0.762
GLYMA04G12530 Glycine max GLYMA04G12530 N 0.757
GLYMA06G48010 Glycine max GLYMA06G48010 N 0.743
VIT_19s0015g01770 Vitis vinifera VIT_19s0015g01770 N 0.732
chr3.CM0047.510.nc Lotus japonicus chr3.CM0047.510.nc N 0.728
Ca_20521 Cicer arietinum Ca_20521 N 0.728
Carubv10014108m.g Capsella rubella Carubv10014108m.g I 0.722
Cagra.0690s0033 Capsella grandiflora Cagra.0690s0033 I 0.722
Bostr.3640s0117 Boechera stricta Bostr.3640s0117 I 0.721
HMGB10 Arabidopsis thaliana AT3G13350 D 0.714
AMTR_s00061p00067260 Amborella trichopoda AMTR_s00061p00067260 N 0.709
fgenesh2_kg.3__1419__AT3G13350.1 Arabidopsis lyrata fgenesh2_kg.3__1419__AT3G13350.1 I 0.709
MDP0000167232 Malus domestica MDP0000167232 N 0.704