evm.TU.supercontig_26.248 (Carica papaya)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
evm.TU.supercontig_26.248 T017142_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN

NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.837 0.837
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD

HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.837 0.837
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_26.248 ARID/BRIGHT 33 118
evm.model.supercontig_26.248 Sox 251 318

Links

Other ARID/BRIGHT,Sox family TFs
Other Carica papaya TFs

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34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action