CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene08596-v1.0-hybrid
(
Fragaria vesca
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
gene08596-v1.0-hybrid
T017146_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.822
0.822
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.822
0.822
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna08596.1-v1.0-hybrid
ARID/BRIGHT
36
120
AVVFWDTLRRFHFMMNTRFMVPVIGGKELDLHLLYVEVTRRGGYEKVVEEKKWREVGSIFMFSPTTTSASYVLRKHYRSLLFSYE
mrna08596.1-v1.0-hybrid
Sox
266
333
PKPNRSGYNFFFAEKHCKFKSLYPNREREFTKMIGESWTNLTAEERMVYQNIGVKDKERYKRELEEYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Fragaria vesca
TFs
33 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy