CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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Lus10021228.g
(
Linum usitatissimum
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Lus10021228.g
T017154_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN
NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.810
0.810
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD
HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.810
0.810
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10021228
ARID/BRIGHT
27
112
DAKLFWDTLQKFHSQIGTKFMVPVIGGKDLDLHVLYVEATRRGGYEKVVAEKKWREVGIVFQFSPTTTSASFVLRKHYLNILYHYE
Lus10021228
Sox
254
321
PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKIIGHSWSNLSPEERTVYQNIGKQDKERYRRELKEYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Linum usitatissimum
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava21037.m1
Manihot esculenta
cassava21037.m1
I
0.856
Ciclev10001816m.g
Citrus clementina
Ciclev10001816m.g
I
0.850
orange1.1g020305m.g
Citrus sinensis
orange1.1g020305m.g
I
0.850
Cucsa.271870
Cucumis sativus
Cucsa.271870
I
0.848
PK27175.1
Cannabis sativa
PK27175.1
I
0.841
Lus10005636.g
Linum usitatissimum
Lus10005636.g
N
0.838
Carubv10020597m.g
Capsella rubella
Carubv10020597m.g
I
0.837
Cagra.0799s0081
Capsella grandiflora
Cagra.0799s0081
I
0.837
Gorai.009G190400
Gossypium raimondii
Gorai.009G190400
I
0.837
30170.m014303
Ricinus communis
30170.m014303
I
0.836
Bostr.20129s0046
Boechera stricta
Bostr.20129s0046
I
0.830
evm.TU.supercontig_26.248
Carica papaya
evm.TU.supercontig_26.248
I
0.830
TCM_034318
Theobroma cacao
TCM_034318
I
0.830
fgenesh2_kg.2__1891__AT1G76110.1
Arabidopsis lyrata
fgenesh2_kg.2__1891__AT1G76110.1
I
0.824
Thhalv10018826m.g
Eutrema salsugineum
Thhalv10018826m.g
I
0.824
MTR_3g114920
Medicago truncatula
MTR_3g114920
I
0.824
Bo6g120140
Brassica oleracea
Bo6g120140
I
0.822
SapurV1A.0573s0150
Salix purpurea
SapurV1A.0573s0150
I
0.817
HMGB9
Arabidopsis thaliana
AT1G76110
D
0.810
GLYMA04G02210
Glycine max
GLYMA04G02210
I
0.810
Bra015787
Brassica rapa
Bra015787
I
0.810
Ca_04857
Cicer arietinum
Ca_04857
I
0.810
POPTR_0005s26800
Populus trichocarpa
POPTR_0005s26800
I
0.809
PRUPE_ppa009338mg
Prunus persica
PRUPE_ppa009338mg
I
0.804
Eucgr.F03526
Eucalyptus grandis
Eucgr.F03526
I
0.804
MDP0000204804
Malus domestica
MDP0000204804
I
0.804
gene08596-v1.0-hybrid
Fragaria vesca
gene08596-v1.0-hybrid
I
0.778
Pm006137
Prunus mume
Pm006137
I
0.771
Solyc12g094440.1
Solanum lycopersicum
Solyc12g094440.1
I
0.725
VIT_18s0001g00660
Vitis vinifera
VIT_18s0001g00660
I
0.719
PGSC0003DMG400029327
Solanum tuberosum
PGSC0003DMG400029327
I
0.719