orange1.1g020305m.g (Citrus sinensis)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
orange1.1g020305m.g T017162_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DDB_G0275333
M01656_2.00
Dictyostelium discoideum
NNATHDNNNN

NNNNHDATNN
PBM
Weirauch et al.(2014)
pTH5168
0.516 0.410
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN

NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.861 0.861
GSPATT00004674001
M01665_2.00
Paramecium tetraurelia
NNATYHNN

NNDRATNN
PBM
Weirauch et al.(2014)
pTH5124
0.504 0.470
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD

HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.861 0.861
TTHERM_00243900
M01666_2.00
Tetrahymena thermophila
NDDATYANN

NNTRATHHN
PBM
Weirauch et al.(2014)
pTH5128
0.486 0.410
ARID3A
M01658_2.00
Microcebus murinus
NDATHAWDN

NHWTDATHN
PBM
Weirauch et al.(2014)
pTH9214
0.459 0.398
Arid3a
M00115_2.00
Mus musculus
NDATHADDN

NHHTDATHN
PBM
Badis et al.(2009)
Arid3a_3875
0.459 0.398
Arid3a
M01660_2.00
Mus musculus
NDATHAADN

NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5169
0.459 0.398
ARID3A
M01662_2.00
Procavia capensis
NNATHDNNN

NNNHDATNN
PBM
Weirauch et al.(2014)
pTH9384
0.459 0.398
Arid3a
M02651_2.00
Mus musculus
ATYAAA

TTTRAT
SELEX
Mathelier et al.(2014)
MA0151.1
0.459 0.398
ARID3A
M09766_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DRI1_01
0.459 0.398
Arid3b
M01659_2.00
Mus musculus
NNDATTAAWWN

NWWTTAATHNN
PBM
Weirauch et al.(2014)
pTH4425
0.459 0.373
cfi-1
M01667_2.00
Caenorhabditis elegans
NNATHDNN

NNHDATNN
PBM
Weirauch et al.(2014)
pTH5118
0.459 0.325
ACYPI009013
M01655_2.00
Acyrthosiphon pisum
NDATHAADN

NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5117
0.451 0.361
retn
M01664_2.00
Drosophila melanogaster
NDATHRNN

NNYDATHN
PBM
Weirauch et al.(2014)
pTH5119
0.451 0.361
retn
M03590_2.00
Drosophila melanogaster
NNATTRATHN

NDATYAATNN
SELEX
Nitta et al.(2015)
retn_1
0.451 0.361
retn
M05899_2.00
Drosophila melanogaster
AATYAAAM

KTTTRATT
B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795
0.451 0.361
retn
M09768_2.00
Drosophila melanogaster
NNRATTAADN

NHTTAATYNN
Transfac
Matys et al.(2006)
I$DRI_01
0.451 0.361
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g020305m ARID/BRIGHT 35 118
orange1.1g020305m Sox 248 315
orange1.1g020311m ARID/BRIGHT 35 118
orange1.1g020311m Sox 248 315
orange1.1g020330m ARID/BRIGHT 35 118
orange1.1g020330m Sox 247 314
orange1.1g022436m ARID/BRIGHT 35 118
orange1.1g022436m Sox 217 284
orange1.1g022607m ARID/BRIGHT 35 118
orange1.1g022607m Sox 247 294
orange1.1g027313m ARID/BRIGHT 35 118
orange1.1g027848m ARID/BRIGHT 35 118

Links

Other ARID/BRIGHT,Sox family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

396 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action