orange1.1g020460m.g (Citrus sinensis)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
orange1.1g020460m.g T017163_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g020402m ARID/BRIGHT 48 133
orange1.1g020402m Sox 250 317
orange1.1g020460m ARID/BRIGHT 48 133
orange1.1g020460m Sox 250 317

Links

Other ARID/BRIGHT,Sox family TFs
Other Citrus sinensis TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ciclev10008919m.g Citrus clementina Ciclev10008919m.g N 1.000
TCM_030511 Theobroma cacao TCM_030511 I 0.863
Pm000293 Prunus mume Pm000293 N 0.850
PRUPE_ppa008470mg Prunus persica PRUPE_ppa008470mg N 0.850
MDP0000257366 Malus domestica MDP0000257366 I 0.843
28657.m000391 Ricinus communis 28657.m000391 N 0.843
Gorai.013G147900 Gossypium raimondii Gorai.013G147900 N 0.830
PK06884.1 Cannabis sativa PK06884.1 N 0.824
cassava30583.valid.m1 Manihot esculenta cassava30583.valid.m1 N 0.822
POPTR_0011s17180 Populus trichocarpa POPTR_0011s17180 N 0.817
gene01438-v1.0-hybrid Fragaria vesca gene01438-v1.0-hybrid N 0.817
VIT_19s0015g01770 Vitis vinifera VIT_19s0015g01770 N 0.810
evm.TU.supercontig_12.68 Carica papaya evm.TU.supercontig_12.68 I 0.791
MDP0000167232 Malus domestica MDP0000167232 N 0.763
SapurV1A.0338s0260 Salix purpurea SapurV1A.0338s0260 I 0.758
Aquca_093_00004 Aquilegia coerulea Aquca_093_00004 N 0.731
AMTR_s00061p00067260 Amborella trichopoda AMTR_s00061p00067260 N 0.725
AMTR_s00089p00097770 Amborella trichopoda AMTR_s00089p00097770 I 0.722
GLYMA04G12530 Glycine max GLYMA04G12530 N 0.711
chr3.CM0047.510.nc Lotus japonicus chr3.CM0047.510.nc N 0.706
mgf009259m Mimulus guttatus mgf009259m N 0.706
Ca_20521 Cicer arietinum Ca_20521 N 0.706