CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Aa02269
(
Panicum virgatum
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Pavir.Aa02269
T017165_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Aa02269.1.p
ARID/BRIGHT
69
154
DAARFRAALERLHAHMGTRLKVPIIGGKDLDLHQLYKEVTSRGGIDKVKAENRWREVTASFIFPATATNASFMLKKYYMSLLYHFE
Pavir.Aa02269.1.p
Sox
281
348
PKPNRSGYNFFFQDQHRILKPQYPGQDRLISKMIGERWNNLGPEDKAVYQERGVQDKERYRTQLAAYK
Pavir.Aa02269.2.p
ARID/BRIGHT
1
71
MGTRLKVPIIGGKDLDLHQLYKEVTSRGGIDKVKAENRWREVTASFIFPATATNASFMLKKYYMSLLYHFE
Pavir.Aa02269.2.p
Sox
198
265
PKPNRSGYNFFFQDQHRILKPQYPGQDRLISKMIGERWNNLGPEDKAVYQERGVQDKERYRTQLAAYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Panicum virgatum
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ab01767
Panicum virgatum
Pavir.Ab01767
N
0.987
Si017168m.g
Setaria italica
Si017168m.g
N
0.986
Sb04g017850
Sorghum bicolor
Sb04g017850
N
0.967
GRMZM2G024976
Zea mays
GRMZM2G024976
N
0.961
Traes_6AS_A465E600A
Triticum aestivum
Traes_6AS_A465E600A
N
0.949
BRADI3G43310
Brachypodium distachyon
BRADI3G43310
N
0.941
MLOC_42821
Hordeum vulgare
MLOC_42821
I
0.922
ONIVA02G17640
Oryza nivara
ONIVA02G17640
N
0.913
OB0121G10030
Oryza brachyantha
OB0121G10030
N
0.899
ORUFI02G16870
Oryza rufipogon
ORUFI02G16870
N
0.895
OS02G0469900
Oryza sativa
OS02G0469900
N
0.895
OMERI02G15910
Oryza meridionalis
OMERI02G15910
N
0.895
OBART02G16380
Oryza barthii
OBART02G16380
N
0.895
OPUNC02G14620
Oryza punctata
OPUNC02G14620
N
0.895
OGLUM02G16420
Oryza glumaepatula
OGLUM02G16420
N
0.895
OLONG_013998
Oryza longistaminata
OLONG_013998
N
0.895
BGIOSGA008185
Oryza indica
BGIOSGA008185
N
0.895
LPERR02G13140
Leersia perrieri
LPERR02G13140
I
0.810
TRIUR3_18598
Triticum urartu
TRIUR3_18598
N
0.765
GSMUA_Achr6G21080_001
Musa acuminata
GSMUA_Achr6G21080_001
I
0.703