Thhalv10007631m.g (Eutrema salsugineum)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Thhalv10007631m.g T017171_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB15
M06696_2.00
Arabidopsis thaliana
TWTAWWATAWRGTWTW

WAWACYWTATWWTAWA
Dap-seq
OMalley et al.(2016)
AT1G04880_col_a
0.954 0.954
HMGB15
M06697_2.00
Arabidopsis thaliana
TATAWHATATRGTWT

AWACYATATDWTATA
Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a
0.954 0.954
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10007631m ARID/BRIGHT 31 116
Thhalv10007631m Sox 259 326

Links

Other ARID/BRIGHT,Sox family TFs
Other Eutrema salsugineum TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo00954s040 Brassica oleracea Bo00954s040 N 0.000
Bo1g053550 Brassica oleracea Bo1g053550 N 0.000
Bo1g110110 Brassica oleracea Bo1g110110 N 0.000
Bo1g117730 Brassica oleracea Bo1g117730 N 0.000
Bo2g119430 Brassica oleracea Bo2g119430 N 0.000
Bo4g009340 Brassica oleracea Bo4g009340 N 0.000
Bo4g019810 Brassica oleracea Bo4g019810 N 0.000
Bo4g052050 Brassica oleracea Bo4g052050 N 0.000
Bo4g154600 Brassica oleracea Bo4g154600 N 0.000
Bo5g034250 Brassica oleracea Bo5g034250 N 0.000
Bo6g099260 Brassica oleracea Bo6g099260 N 0.000
Bo7g016140 Brassica oleracea Bo7g016140 N 0.000
Bo7g065750 Brassica oleracea Bo7g065750 N 0.000
Bo7g090920 Brassica oleracea Bo7g090920 N 0.000
Bo9g140760 Brassica oleracea Bo9g140760 N 0.000