Bra038750 (Brassica rapa)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02178 (AT_hook) IPR017956 Bra038750 T017277_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW

WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991 0.846
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD

HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991 0.769
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT

ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991 0.692
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW

WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991 0.692
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT

ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991 0.692
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW

ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991 0.615
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT

ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991 0.615
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW

WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991 0.615
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW

WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991 0.538
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991 0.538
phf21ab
M01678_2.00
Danio rerio
NNNDNADW

WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991 0.538
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA

TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991 0.538
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD

HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991 0.538
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN

NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991 0.538
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH

DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991 0.538
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN

NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991 0.538
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN

NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991 0.538
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991 0.538
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW

WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991 0.346
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH

DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991 0.333
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW

WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991 0.320
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN

NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991 0.308
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991 0.308
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN

NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991 0.308
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991 0.308
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW

WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991 0.308
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991 0.308
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN

NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991 0.280
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW

WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991 0.263
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN

NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991 0.256
HMGA2
M09771_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991 0.256
Q7DLU9_PEA
M09772_2.00
Pisum sativum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991 0.231
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991 0.216
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH

DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991 0.205
HMGA1
M09769_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991 0.205
HMGA1
M09770_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991 0.205
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN

NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991 0.184
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH

DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991 0.145
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN

NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991 0.145
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH

DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991 0.135
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY

RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991 0.135
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN

NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991 0.074
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW

WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991 0.000
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra038750.1-P AT hook 22 34

Links

Other AT hook family TFs
Other Brassica rapa TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MCYG_03807 Arthroderma otae MCYG_03807 N 0.000
PFICI_00537 Pestalotiopsis fici PFICI_00537 N 0.000
PMAA_044080 Talaromyces marneffei PMAA_044080 N 0.000
PODANS_1_9030 Podospora anserina PODANS_1_9030 N 0.000
PTRG_00498 Pyrenophora triticirepentis PTRG_00498 N 0.000
PTT_17162 Pyrenophora teres PTT_17162 N 0.000
PV09_02391 Verruconis gallopava PV09_02391 N 0.000
PVAR5_5257 Byssochlamys spectabilis PVAR5_5257 N 0.000
S40285_00587 Stachybotrys chlorohalonata S40285_00587 N 0.000
S40288_08991 Stachybotrys chartarum S40288_08991 N 0.000
SAPIO_CDS3548 Scedosporium apiospermum SAPIO_CDS3548 N 0.000
PAS_chr4_0275 Komagataella pastoris PAS_chr4_0275 N 0.000
PABG_03326 Paracoccidioides brasiliensis PABG_03326 N 0.000
MGG_11252 Magnaporthe oryzae MGG_11252 N 0.000
MGU_02879 Metarhizium guizhouense MGU_02879 N 0.000
MGYG_03415 Microsporum gypseum MGYG_03415 N 0.000
MPH_03526 Macrophomina phaseolina MPH_03526 N 0.000
Mycgr3G15680 Zymoseptoria tritici Mycgr3G15680 N 0.000
MYCTH_2295158 Myceliophthora thermophila MYCTH_2295158 N 0.000
NechaG98827 Fusarium solani NechaG98827 N 0.000
NEUTE1DRAFT_126086 Neurospora tetrasperma NEUTE1DRAFT_126086 N 0.000
OCS_01861 Ophiocordyceps sinensis OCS_01861 N 0.000
PAAG_02862 Paracoccidioides sp lutzii PAAG_02862 N 0.000
SEPMUDRAFT_146122 Sphaerulina musiva SEPMUDRAFT_146122 N 0.000
SETTUDRAFT_98023 Setosphaeria turcica SETTUDRAFT_98023 N 0.000
SMAC_02926 Sordaria macrospora SMAC_02926 N 0.000
VHEMI06321 Torrubiella hemipterigena VHEMI06321 N 0.000
W97_06684 Coniosporium apollinis W97_06684 N 0.000
X797_004055 Metarhizium robertsii X797_004055 N 0.000
estExt_fgenesh1_pg.C_sca_1_chr1_3_00523 Nectria haematococca estExt_fgenesh1_pg.C_sca_1_chr1_3_00523 N 0.000
estExt_Genewise1.C_70837 Neurospora discreta estExt_Genewise1.C_70837 N 0.000
gw1.1.1107.1 Mycosphaerella graminicola gw1.1.1107.1 N 0.000
NCU03206 Neurospora crassa NCU03206 N 0.000
AB07424.1 Alternaria brassicicola AB07424.1 N 0.000
e_gw1.00083.503.1 Aspergillus carbonarius e_gw1.00083.503.1 N 0.000
PMAA_044080 Penicillium marneffei PMAA_044080 N 0.000
VDBG_04878 Verticillium alfalfae VDBG_04878 N 0.000
VDAG_04420 Verticillium dahliae VDAG_04420 N 0.000
THITE_163820 Thielavia terrestris THITE_163820 N 0.000
TRIATDRAFT_155289 Trichoderma atroviride TRIATDRAFT_155289 N 0.000
TRIREDRAFT_73689 Trichoderma reesei TRIREDRAFT_73689 N 0.000
TRIVIDRAFT_178335 Trichoderma virens TRIVIDRAFT_178335 N 0.000
TSTA_074520 Talaromyces stipitatus TSTA_074520 N 0.000
UCREL1_1680 Eutypa lata UCREL1_1680 N 0.000
UCRNP2_6174 Neofusicoccum parvum UCRNP2_6174 N 0.000
UCRPA7_7686 Togninia minima UCRPA7_7686 N 0.000
UREG_03426 Uncinocarpus reesii UREG_03426 N 0.000
UV8b_4337 Ustilaginoidea virens UV8b_4337 N 0.000
XP_002493688.1 Pichia pastoris XP_002493688.1 N 0.000
CIMG_10312 Coccidioides immitis CIMG_10312 N 0.000
ANIA_01254 Aspergillus nidulans CADANIAG00001369 N 0.000
CADAORAG00009176 Aspergillus oryzae CADAORAG00009176 N 0.000
ATEG_00218 Aspergillus terreus CADATEAG00007810 N 0.000
NFIA_015390 Neosartorya fischeri CADNFIAG00001884 N 0.000
CCM_06155 Cordyceps militaris CCM_06155 N 0.000
CFIO01_11103 Colletotrichum fioriniae CFIO01_11103 N 0.000
CGGC5_5527 Colletotrichum gloeosporioides CGGC5_5527 N 0.000
CH063_00827 Colletotrichum higginsianum CH063_00827 N 0.000
CHGG_01405 Chaetomium globosum CHGG_01405 N 0.000
Cob_03340 Colletotrichum orbiculare Cob_03340 N 0.000
CADANGAG00006538 Aspergillus niger CADANGAG00006538 N 0.000
AFUA_1G10280 Aspergillus fumigatus CADAFUAG00006895 N 0.000
SNOG_06818 Stagonospora nodorum SNOG_06818 N 0.000
VDBG_04878 Verticillium albo atrum VDBG_04878 N 0.000
ACRE_062480 Acremonium chrysogenum ACRE_062480 N 0.000
AOL_s00006g109 Arthrobotrys oligospora AOL_s00006g109 N 0.000
BAUCODRAFT_81988 Baudoinia compniacensis BAUCODRAFT_81988 N 0.000
BBA_09716 Beauveria bassiana BBA_09716 N 0.000
Bcin11g05090 Botrytis cinerea Bcin11g05090 N 0.000
BDDG_03679 Blastomyces dermatitidis BDDG_03679 N 0.000
ACLA_025260 Aspergillus clavatus CADACLAG00002544 N 0.000
CADAFLAG00008367 Aspergillus flavus CADAFLAG00008367 N 0.000
COCC4DRAFT_37467 Bipolaris maydis COCC4DRAFT_37467 N 0.000
COCCADRAFT_94634 Bipolaris zeicola COCCADRAFT_94634 N 0.000
COCMIDRAFT_89879 Bipolaris oryzae COCMIDRAFT_89879 N 0.000
GGTG_10198 Gaeumannomyces graminis GGTG_10198 N 0.000
GLRG_01571 Colletotrichum graminicola GLRG_01571 N 0.000
GSTUM_00011427001 Tuber melanosporum GSTUM_00011427001 N 0.000
H072_9732 Dactylellina haptotyla H072_9732 N 0.000
HCBG_03247 Histoplasma capsulatum HCBG_03247 N 0.000
LEMA_P053500.1 Leptosphaeria maculans LEMA_P053500.1 N 0.000
MAJ_00791 Metarhizium majus MAJ_00791 N 0.000
MAM_01985 Metarhizium album MAM_01985 N 0.000
MANI_001534 Metarhizium anisopliae MANI_001534 N 0.000
MAPG_03172 Magnaporthe poae MAPG_03172 N 0.000
FVEG_00935 Fusarium verticillioides FVEG_00935 N 0.000
FPSE_02006 Fusarium pseudograminearum FPSE_02006 N 0.000
COCSADRAFT_95919 Bipolaris sorokiniana COCSADRAFT_95919 N 0.000
COCVIDRAFT_96285 Bipolaris victoriae COCVIDRAFT_96285 N 0.000
CSUB01_05856 Colletotrichum sublineola CSUB01_05856 N 0.000
CTHT_0054720 Chaetomium thermophilum CTHT_0054720 N 0.000
DOTSEDRAFT_93227 Dothistroma septosporum DOTSEDRAFT_93227 N 0.000
EPUS_01383 Endocarpon pusillum EPUS_01383 N 0.000
EURHEDRAFT_381256 Aspergillus ruber EURHEDRAFT_381256 N 0.000
FFUJ_00995 Fusarium fujikuroi FFUJ_00995 N 0.000
FGRRES_00477 Fusarium graminearum FGRRES_00477 N 0.000
FOXG_00578 Fusarium oxysporum FOXG_00578 N 0.000
MBR_03315 Metarhizium brunneum MBR_03315 N 0.000