HMGA1 (Pan troglodytes)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02178 (AT_hook) IPR017956 ENSPTRG00000040884 T017439_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGA1
M09769_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991 1.000
HMGA1
M09770_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991 1.000
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN

NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991 0.763
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW

WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991 0.763
HMGA2
M09771_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991 0.763
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991 0.553
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH

DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991 0.526
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY

RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991 0.423
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN

NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991 0.421
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991 0.421
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN

NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991 0.421
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH

DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991 0.404
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN

NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991 0.395
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW

WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991 0.395
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN

NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991 0.395
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN

NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991 0.371
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991 0.346
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW

WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991 0.346
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991 0.346
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW

WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991 0.342
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH

DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991 0.342
Q7DLU9_PEA
M09772_2.00
Pisum sativum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991 0.342
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH

DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991 0.339
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN

NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991 0.222
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD

HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991 0.211
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT

ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991 0.211
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN

NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991 0.211
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW

ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991 0.211
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW

WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991 0.211
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW

WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991 0.184
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT

ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991 0.184
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991 0.184
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW

WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991 0.184
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT

ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991 0.184
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW

WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991 0.158
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991 0.158
phf21ab
M01678_2.00
Danio rerio
NNNDNADW

WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991 0.158
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA

TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991 0.158
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD

HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991 0.158
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN

NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991 0.158
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH

DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991 0.158
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN

NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991 0.158
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW

WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991 0.000
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000059798 AT hook 23 34
ENSPTRP00000059798 AT hook 55 67
ENSPTRP00000059798 AT hook 81 93

Links

Other AT hook family TFs
Other Pan troglodytes TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Hlf Mus musculus ENSMUSG00000003949 D 0.000
HLF Homo sapiens ENSG00000108924 D 0.000
Pdp1 Drosophila melanogaster FBgn0016694 D 0.000
tefb Takifugu rubripes ENSTRUG00000003565 I 0.000
HMEL011029 Heliconius melpomene HMEL011029 I 0.000
ISCW004978 Ixodes scapularis ISCW004978 I 0.000
KGM_21614 Danaus plexippus KGM_21614 I 0.000
MCINX004280 Melitaea cinxia MCINX004280 I 0.000
NV13265 Nasonia vitripennis NV13265 I 0.000
PHUM426270 Pediculus humanus PHUM426270 I 0.000
SMAR002779 Strigamia maritima SMAR002779 I 0.000
YQE_01842 Dendroctonus ponderosae YQE_01842 I 0.000
Aan_R004902 Calypte anna Aan_R004902 I 0.000
Afo_R002997 Aptenodytes forsteri Afo_R002997 I 0.000
Alligator_sinensis_CCG020587.1 Alligator sinensis Alligator_sinensis_CCG020587.1 I 0.000
Brh_R008067 Buceros rhinoceros Brh_R008067 I 0.000
GB43643 Apis mellifera GB43643 I 0.000
GA28498 Drosophila pseudoobscura FBgn0249858 I 0.000
hlfb Takifugu rubripes ENSTRUG00000003909 I 0.000
ENSTSYG00000009210 Tarsius syrichta ENSTSYG00000009210 I 0.000
HLF Tursiops truncatus ENSTTRG00000007194 I 0.000
ENSXMAG00000012903 Xiphophorus maculatus ENSXMAG00000012903 I 0.000
ENSXMAG00000016939 Xiphophorus maculatus ENSXMAG00000016939 I 0.000
GF24150 Drosophila ananassae FBgn0101144 I 0.000
GG14935 Drosophila erecta FBgn0107189 I 0.000
GH23565 Drosophila grimshawi FBgn0131022 I 0.000
GI12193 Drosophila mojavensis FBgn0134950 I 0.000
GL17823 Drosophila persimilis FBgn0155426 I 0.000
GD13032 Drosophila simulans FBgn0184754 I 0.000
GJ11425 Drosophila virilis FBgn0198683 I 0.000
GK10510 Drosophila willistoni FBgn0212525 I 0.000
GE20386 Drosophila yakuba FBgn0237702 I 0.000
Cflo_03674--XP_391997.2_APIME Camponotus floridanus Cflo_03674--XP_391997.2_APIME I 0.000
Cmyd_10013489 Chelonia mydas Cmyd_10013489 I 0.000
ENSBTAP00000008682-D1 Bos grunniens ENSBTAP00000008682-D1 I 0.000
ADIR007438 Anopheles dirus ADIR007438 I 0.000
AEPI005427 Anopheles epiroticus AEPI005427 I 0.000
AFAF017409 Anopheles farauti AFAF017409 I 0.000
AFUN000141 Anopheles funestus AFUN000141 I 0.000
AMEM018156 Anopheles merus AMEM018156 I 0.000
AMIN007990 Anopheles minimus AMIN007990 I 0.000
AQUA000938 Anopheles quadriannulatus AQUA000938 I 0.000
ASIS001542 Anopheles sinensis ASIS001542 I 0.000
ASTEI09431 Anopheles stephensi ASTEI09431 I 0.000
LLOJ006612 Lutzomyia longipalpis LLOJ006612 I 0.000
MDOA003519 Musca domestica MDOA003519 I 0.000
PPAI002842 Phlebotomus papatasi PPAI002842 I 0.000
ANCDUO_14303 Ancylostoma duodenale ANCDUO_14303 I 0.000
L596_g3194 Steinernema carpocapsae L596_g3194 I 0.000
ACUA004794 Anopheles culicifacies ACUA004794 I 0.000
ACOM039838 Anopheles coluzzii ACOM039838 I 0.000
ENSP00000226067 Macaca fascicularis ENSP00000226067 I 0.000
Gfo_R006518 Geospiza fortis Gfo_R006518 I 0.000
Hsal_12188--XP_391997.2_APIME Harpegnathos saltator Hsal_12188--XP_391997.2_APIME I 0.000
Myotis_brandtii_Hlf_10020713 Myotis brandtii Myotis_brandtii_Hlf_10020713 I 0.000
Ogr00037 Ophisaurus gracilis Ogr00037 I 0.000
Pvit_00680 Pogona vitticeps Pvit_00680 I 0.000
Tal_R009182 Tyto alba Tal_R009182 I 0.000
e_gw.273.32.1 Branchiostoma floridae e_gw.273.32.1 I 0.000
e_gw.273.54.1 Branchiostoma floridae e_gw.273.54.1 I 0.000
CLEC008918 Cimex lectularius CLEC008918 I 0.000
LCUP014933 Lucilia cuprina LCUP014933 I 0.000
AALB004300 Anopheles albimanus AALB004300 I 0.000
AARA000887 Anopheles arabiensis AARA000887 I 0.000
AATE006511 Anopheles atroparvus AATE006511 I 0.000
L898_g30246 Steinernema monticolum L898_g30246 I 0.000
HLF Taeniopygia guttata ENSTGUG00000009478 I 0.000
CpipJ_CPIJ014920 Culex pipiens CpipJ_CPIJ014920 I 0.000
ENSCHOG00000001396 Choloepus hoffmanni ENSCHOG00000001396 I 0.000
HLF Callithrix jacchus ENSCJAG00000011298 I 0.000
ENSCPOG00000011000 Cavia porcellus ENSCPOG00000011000 I 0.000
ENSCSAG00000005557 Chlorocebus sabaeus ENSCSAG00000005557 I 0.000
hlfa Danio rerio ENSDARG00000074752 I 0.000
ENSDORG00000012644 Dipodomys ordii ENSDORG00000012644 I 0.000
HLF Equus caballus ENSECAG00000016953 I 0.000
HLF Erinaceus europaeus ENSEEUG00000010964 I 0.000
HLF Echinops telfairi ENSETEG00000017670 I 0.000
ENSFALG00000002265 Ficedula albicollis ENSFALG00000002265 I 0.000
HLF Felis catus ENSFCAG00000022556 I 0.000
tefb Gasterosteus aculeatus ENSGACG00000007628 I 0.000
hlfb Gasterosteus aculeatus ENSGACG00000010103 I 0.000
HLF Gallus gallus ENSGALG00000003059 I 0.000
HLF Canis familiaris ENSCAFG00000030851 I 0.000
HLF Bos taurus ENSBTAG00000006618 I 0.000
PDP1 Aedes aegypti AAEL005255 I 0.000
ACEP27179 Atta cephalotes ACEP27179 I 0.000
ACYPI000702 Acyrthosiphon pisum ACYPI000702 I 0.000
ADAC004162 Anopheles darlingi ADAC004162 I 0.000
PDP1 Anopheles gambiae AGAP006376 I 0.000
BGIBMGA003874 Bombyx mori BGIBMGA003874 I 0.000
CapteG151518 Capitella teleta CapteG151518 I 0.000
CGI_10008414 Crassostrea gigas CGI_10008414 I 0.000
PDP1 Culex quinquefasciatus CPIJ014920 I 0.000
HLF Anolis carolinensis ENSACAG00000017417 I 0.000
ENSAMEG00000014714 Ailuropoda melanoleuca ENSAMEG00000014714 I 0.000
ENSAMXG00000008798 Astyanax mexicanus ENSAMXG00000008798 I 0.000
ENSAMXG00000015442 Astyanax mexicanus ENSAMXG00000015442 I 0.000
ENSAPLG00000004386 Anas platyrhynchos ENSAPLG00000004386 I 0.000
HLF Gorilla gorilla ENSGGOG00000006075 I 0.000
ENSGMOG00000004830 Gadus morhua ENSGMOG00000004830 I 0.000
ENSONIG00000019079 Oreochromis niloticus ENSONIG00000019079 I 0.000
HLF Ochotona princeps ENSOPRG00000004195 I 0.000
hlfa Oryzias latipes ENSORLG00000000969 I 0.000
ENSPANG00000022360 Papio anubis ENSPANG00000022360 I 0.000
ENSPFOG00000004560 Poecilia formosa ENSPFOG00000004560 I 0.000
ENSPFOG00000018222 Poecilia formosa ENSPFOG00000018222 I 0.000
ENSPPYG00000008257 Pongo abelii ENSPPYG00000008257 I 0.000
ENSPSIG00000016356 Pelodiscus sinensis ENSPSIG00000016356 I 0.000
HLF Pan troglodytes ENSPTRG00000009424 I 0.000
HLF Pteropus vampyrus ENSPVAG00000007461 I 0.000
Hlf Rattus norvegicus ENSRNOG00000002456 I 0.000
ENSSARG00000013841 Sorex araneus ENSSARG00000013841 I 0.000
ENSSHAG00000015304 Sarcophilus harrisii ENSSHAG00000015304 I 0.000
ENSSTOG00000029018 Ictidomys tridecemlineatus ENSSTOG00000029018 I 0.000
ENSONIG00000009563 Oreochromis niloticus ENSONIG00000009563 I 0.000
HLF Otolemur garnettii ENSOGAG00000007056 I 0.000
ENSLACG00000012701 Latimeria chalumnae ENSLACG00000012701 I 0.000
ENSLACG00000012726 Latimeria chalumnae ENSLACG00000012726 I 0.000
HLF Loxodonta africana ENSLAFG00000016475 I 0.000
ENSLOCG00000011595 Lepisosteus oculatus ENSLOCG00000011595 I 0.000
ENSLOCG00000012233 Lepisosteus oculatus ENSLOCG00000012233 I 0.000
ENSMEUG00000016384 Macropus eugenii ENSMEUG00000016384 I 0.000
ENSMICG00000002860 Microcebus murinus ENSMICG00000002860 I 0.000
HLF Myotis lucifugus ENSMLUG00000007393 I 0.000
HLF Macaca mulatta ENSMMUG00000022627 I 0.000
HLF Monodelphis domestica ENSMODG00000014851 I 0.000
ENSMPUG00000015400 Mustela putorius furo ENSMPUG00000015400 I 0.000
ENSNLEG00000007993 Nomascus leucogenys ENSNLEG00000007993 I 0.000
HLF Ornithorhynchus anatinus ENSOANG00000010288 I 0.000
HLF Oryctolagus cuniculus ENSOCUG00000010547 I 0.000
HLF Tupaia belangeri ENSTBEG00000006958 I 0.000