Hmga2 (Rattus norvegicus)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02178 (AT_hook) IPR017956 ENSRNOG00000042460 T017441_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
a non-histone chromosomal architecture protein [RGD, Feb 2006]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN

NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991 0.974
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW

WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991 0.897
HMGA2
M09771_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991 0.897
HMGA1
M09769_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991 0.769
HMGA1
M09770_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991 0.769
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991 0.615
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH

DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991 0.538
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH

DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991 0.442
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991 0.423
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY

RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991 0.423
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW

WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991 0.423
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991 0.423
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN

NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991 0.410
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN

NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991 0.410
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN

NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991 0.387
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991 0.385
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN

NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991 0.385
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN

NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991 0.385
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW

WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991 0.385
Q7DLU9_PEA
M09772_2.00
Pisum sativum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991 0.385
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW

WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991 0.359
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH

DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991 0.355
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH

DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991 0.333
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN

NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991 0.235
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT

ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991 0.231
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD

HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991 0.205
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN

NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991 0.205
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW

WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991 0.205
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW

ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991 0.179
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW

WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991 0.179
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT

ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991 0.179
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991 0.179
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW

WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991 0.179
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT

ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991 0.179
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW

WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991 0.154
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991 0.154
phf21ab
M01678_2.00
Danio rerio
NNNDNADW

WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991 0.154
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA

TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991 0.154
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD

HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991 0.154
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN

NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991 0.154
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH

DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991 0.154
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN

NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991 0.154
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW

WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991 0.000
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000061041 AT hook 26 38
ENSRNOP00000061041 AT hook 46 58
ENSRNOP00000061041 AT hook 74 86

Links

Other AT hook family TFs
Other Rattus norvegicus TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARB_02044 Arthroderma benhamiae ARB_02044 N 0.000
BDDG_06367 Blastomyces dermatitidis BDDG_06367 N 0.000
ACLA_039280 Aspergillus clavatus CADACLAG00003549 N 0.000
CADAFLAG00002502 Aspergillus flavus CADAFLAG00002502 N 0.000
AFUA_3G11380 Aspergillus fumigatus CADAFUAG00005326 N 0.000
CADANGAG00002230 Aspergillus niger CADANGAG00002230 N 0.000
ANIA_02905 Aspergillus nidulans CADANIAG00010184 N 0.000
CADAORAG00001291 Aspergillus oryzae CADAORAG00001291 N 0.000
ATEG_04673 Aspergillus terreus CADATEAG00009625 N 0.000
NFIA_065920 Neosartorya fischeri CADNFIAG00005868 N 0.000
CIMG_03690 Coccidioides immitis CIMG_03690 N 0.000
CPC735_005930 Coccidioides posadasii CPC735_005930 N 0.000
EURHEDRAFT_403202 Aspergillus ruber EURHEDRAFT_403202 N 0.000
fgenesh1_pg.00866_#_396 Aspergillus carbonarius fgenesh1_pg.00866_#_396 N 0.000
H101_05877 Trichophyton interdigitale H101_05877 N 0.000
H102_07559 Trichophyton rubrum H102_07559 N 0.000
H105_07586 Trichophyton soudanense H105_07586 N 0.000
HCBG_06782 Histoplasma capsulatum HCBG_06782 N 0.000
MBM_02991 Marssonina brunnea MBM_02991 N 0.000
MCYG_00625 Arthroderma otae MCYG_00625 N 0.000
MCYG_00625 Microsporum canis MCYG_00625 N 0.000
MGYG_01337 Microsporum gypseum MGYG_01337 N 0.000
Pc13g09650 Penicillium chrysogenum Pc13g09650 N 0.000
PCH_Pc13g09650 Penicillium rubens PCH_Pc13g09650 N 0.000
PDE_04763 Penicillium oxalicum PDE_04763 N 0.000
PDIP_29650 Penicillium digitatum PDIP_29650 N 0.000
PEX1_044080 Penicillium expansum PEX1_044080 N 0.000
PITC_061280 Penicillium italicum PITC_061280 N 0.000
PMAA_019260 Penicillium marneffei PMAA_019260 N 0.000
PMAA_019260 Talaromyces marneffei PMAA_019260 N 0.000
PV06_04366 Exophiala oligosperma PV06_04366 N 0.000
PV08_10257 Exophiala spinifera PV08_10257 N 0.000
PVAR5_7731 Byssochlamys spectabilis PVAR5_7731 N 0.000
TEQG_05494 Trichophyton equinum TEQG_05494 N 0.000
TESG_05752 Trichophyton tonsurans TESG_05752 N 0.000
TRV_05872 Trichophyton verrucosum TRV_05872 N 0.000
U727_00433320441 Penicillium solitum U727_00433320441 N 0.000
UREG_07450 Uncinocarpus reesii UREG_07450 N 0.000
VHEMI07914 Torrubiella hemipterigena VHEMI07914 N 0.000