CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PVAR5_4927
(
Byssochlamys spectabilis
)
AT hook
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02178 (AT_hook)
IPR017956
PVAR5_4927
T017778_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN
NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991
0.444
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN
NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991
0.414
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH
DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991
0.345
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH
DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991
0.322
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY
RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991
0.310
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN
NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991
0.253
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN
NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991
0.241
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW
WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991
0.241
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH
DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991
0.241
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN
NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991
0.241
HMGA2
M09771_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991
0.241
HMGA1
M09769_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991
0.218
HMGA1
M09770_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991
0.218
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN
NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991
0.184
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW
WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991
0.184
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN
NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991
0.172
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN
NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991
0.172
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN
NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991
0.161
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH
DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991
0.161
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW
WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991
0.161
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991
0.161
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW
WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991
0.161
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991
0.161
Q7DLU9_PEA
M09772_2.00
Pisum sativum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991
0.149
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW
WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991
0.103
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD
HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991
0.092
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT
ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991
0.092
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW
ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991
0.092
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW
WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991
0.092
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT
ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991
0.092
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW
WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991
0.092
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT
ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991
0.092
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW
WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991
0.080
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH
DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991
0.080
phf21ab
M01678_2.00
Danio rerio
NNNDNADW
WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991
0.080
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA
TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991
0.080
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD
HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991
0.080
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN
NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991
0.080
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH
DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991
0.080
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN
NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991
0.080
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN
NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991
0.080
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH
DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991
0.080
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW
WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991
0.011
For this family, TFs with SR scores >
0.990
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GAD96277
AT hook
202
214
KRKRGRPSKTAEE
GAD96277
AT hook
232
244
PRGRGRPPNTGTK
GAD96277
AT hook
258
269
GRGRGRPRKPES
GAD96277
AT hook
285
297
PRGRGRPRKSDGA
GAD96277
AT hook
317
329
PGSRGRPRKSDAA
GAD96277
AT hook
336
347
KSPGRPKKAAAP
GAD96277
AT hook
359
369
QKRRGRPRKSG
Links
Other
AT hook
family TFs
Other
Byssochlamys spectabilis
TFs
1072 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy