Traes_6AS_79F735681 (Triticum aestivum)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02178 (AT_hook) IPR017956 Traes_6AS_79F735681 T017844_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH

DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991 0.577
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991 0.577
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW

WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991 0.577
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991 0.577
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN

NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991 0.500
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991 0.500
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW

WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991 0.500
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN

NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991 0.500
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN

NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991 0.500
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW

WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991 0.500
Q7DLU9_PEA
M09772_2.00
Pisum sativum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991 0.462
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN

NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991 0.368
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW

WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991 0.346
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991 0.324
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN

NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991 0.308
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW

ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991 0.308
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT

ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991 0.308
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991 0.308
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW

WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991 0.308
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH

DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991 0.282
HMGA1
M09769_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991 0.282
HMGA1
M09770_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991 0.282
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD

HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991 0.269
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW

WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991 0.269
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991 0.269
phf21ab
M01678_2.00
Danio rerio
NNNDNADW

WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991 0.269
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT

ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991 0.269
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA

TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991 0.269
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD

HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991 0.269
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN

NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991 0.269
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH

DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991 0.269
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN

NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991 0.269
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW

WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991 0.269
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT

ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991 0.269
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW

WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991 0.263
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN

NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991 0.256
HMGA2
M09771_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991 0.256
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH

DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991 0.250
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY

RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991 0.250
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH

DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991 0.226
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN

NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991 0.226
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN

NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991 0.148
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW

WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991 0.000
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_6AS_79F735681.2 AT hook 208 220
Traes_6AS_79F735681.2 AT hook 236 248

Links

Other AT hook family TFs
Other Triticum aestivum TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29938.m000611 Ricinus communis 29938.m000611 I 0.000
Aquca_001_00483 Aquilegia coerulea Aquca_001_00483 N 0.000
Bo2g072950 Brassica oleracea Bo2g072950 I 0.000
Bo5g038890 Brassica oleracea Bo5g038890 I 0.000
Bo6g113060 Brassica oleracea Bo6g113060 I 0.000
Bo7g057680 Brassica oleracea Bo7g057680 I 0.000
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.000
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.000
Bra007974 Brassica rapa Bra007974 I 0.000
Bra012345 Brassica rapa Bra012345 I 0.000
Bra016133 Brassica rapa Bra016133 I 0.000
Bra024539 Brassica rapa Bra024539 I 0.000
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.000
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.000
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.000
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.000
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.000
cassava9593.m1 Manihot esculenta cassava9593.m1 N 0.000
Ca_15055 Cicer arietinum Ca_15055 I 0.000
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.000
Cla012182 Citrullus lanatus Cla012182 I 0.000
Cucsa.088640 Cucumis sativus Cucsa.088640 N 0.000
ERF019 Arabidopsis thaliana AT1G22810 D 0.000
ERF020 Arabidopsis thaliana AT1G71520 I 0.000
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.000
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.000
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.000
gene27062-v1.0-hybrid Fragaria vesca gene27062-v1.0-hybrid N 0.000
GLYMA01G44230 Glycine max GLYMA01G44230 N 0.000
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.000
GRMZM2G307152 Zea mays GRMZM2G307152 N 0.000
GSMUA_Achr10G04450_001 Musa acuminata GSMUA_Achr10G04450_001 N 0.000
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.000
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.000
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.000
MDP0000932292 Malus domestica MDP0000932292 N 0.000
mgf010891m Mimulus guttatus mgf010891m I 0.000
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.000
OB01G48490 Oryza brachyantha OB01G48490 N 0.000
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.000
PGSC0003DMG400008734 Solanum tuberosum PGSC0003DMG400008734 N 0.000
Pm004265 Prunus mume Pm004265 N 0.000
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.000
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.000
PRUPE_ppa020605mg Prunus persica PRUPE_ppa020605mg N 0.000
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.000
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.000
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.000
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.000
Solyc01g057080.1 Solanum lycopersicum Solyc01g057080.1 N 0.000
TCM_036224 Theobroma cacao TCM_036224 I 0.000
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.000
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.000
TRAES3BF106000020CFD_g Triticum aestivum TRAES3BF106000020CFD_g N 0.000