cassava4485.m1 (Manihot esculenta)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02178 (AT_hook) IPR017956 cassava4485.m1 T017940_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW

WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991 0.692
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN

NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991 0.692
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT

ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991 0.692
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW

WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991 0.692
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD

HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991 0.615
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991 0.615
phf21ab
M01678_2.00
Danio rerio
NNNDNADW

WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991 0.615
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA

TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991 0.615
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD

HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991 0.615
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN

NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991 0.615
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH

DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991 0.615
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN

NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991 0.615
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT

ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991 0.538
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW

ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991 0.538
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991 0.538
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW

WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991 0.538
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW

WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991 0.500
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW

WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991 0.462
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT

ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991 0.462
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN

NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991 0.360
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN

NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991 0.346
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991 0.346
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN

NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991 0.346
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW

WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991 0.320
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW

WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991 0.308
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH

DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991 0.250
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN

NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991 0.237
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991 0.231
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW

WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991 0.231
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991 0.231
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991 0.216
Q7DLU9_PEA
M09772_2.00
Pisum sativum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991 0.192
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN

NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991 0.179
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH

DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991 0.179
HMGA1
M09769_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991 0.179
HMGA1
M09770_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991 0.179
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW

WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991 0.158
HMGA2
M09771_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991 0.154
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY

RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991 0.135
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH

DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991 0.115
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN

NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991 0.099
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH

DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991 0.097
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN

NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991 0.097
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava4485.m1 AT hook 335 347

Links

Other AT hook family TFs
Other Manihot esculenta TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.000
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.000
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.000
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.000
AGL80 Arabidopsis thaliana AT5G48670 D 0.000
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.000
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.000
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.000
Bo9g078450 Brassica oleracea Bo9g078450 I 0.000
Bo2g104810 Brassica oleracea Bo2g104810 I 0.000
Bra029469 Brassica rapa Bra029469 I 0.000
Bra018490 Brassica rapa Bra018490 I 0.000
Bra041022 Brassica rapa Bra041022 I 0.000
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.000
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.000
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.000
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.000
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.000
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.000
evm.TU.supercontig_100.22 Carica papaya evm.TU.supercontig_100.22 N 0.000
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.000
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.000
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.000
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.000
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.000
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.000
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.000
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.000
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.000
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.000
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.000
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.000
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.000
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.000
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.000
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.000
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.000
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.000
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.000
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.000
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.000
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.000
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.000
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.000
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.000
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.000
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.000
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.000
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.000
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.000
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.000
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.000
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.000
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.000
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.000
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.000
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.000
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.000
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.000
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.000
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.000
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.000
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.000
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.000
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.000
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.000
Ca_13275 Cicer arietinum Ca_13275 I 0.000
Ca_08934 Cicer arietinum Ca_08934 I 0.000
Ca_08369 Cicer arietinum Ca_08369 N 0.000
Ca_06495 Cicer arietinum Ca_06495 I 0.000
Cla005226 Citrullus lanatus Cla005226 I 0.000
Cla009163 Citrullus lanatus Cla009163 I 0.000
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.000
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.000
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.000
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.000
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.000
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.000
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.000
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.000
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.000
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.000
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.000
Thhalv10021183m.g Eutrema salsugineum Thhalv10021183m.g I 0.000
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.000
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.000
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.000
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.000
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.000
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.000
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.000
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.000
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.000
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.000
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.000
GLYMA18G06040 Glycine max GLYMA18G06040 N 0.000
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.000
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.000
GLYMA10G28320 Glycine max GLYMA10G28320 N 0.000
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.000
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.000
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.000
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.000
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.000
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.000
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.000
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.000
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.000
Lus10022325.g Linum usitatissimum Lus10022325.g N 0.000
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.000
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.000
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.000
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.000
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.000
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.000
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.000
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.000
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.000
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.000
MDP0000846004 Malus domestica MDP0000846004 I 0.000
MDP0000925348 Malus domestica MDP0000925348 I 0.000
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.000
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.000
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.000
MTR_3g466980 Medicago truncatula MTR_3g466980 N 0.000
mgf026186m Mimulus guttatus mgf026186m I 0.000
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.000
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.000
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.000
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.000
Pm004396 Prunus mume Pm004396 I 0.000
Pm003257 Prunus mume Pm003257 I 0.000
PRUPE_ppa017207mg Prunus persica PRUPE_ppa017207mg N 0.000
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.000
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.000
30199.m000879 Ricinus communis 30199.m000879 I 0.000
30128.m008984 Ricinus communis 30128.m008984 I 0.000
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.000
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.000
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.000
TCM_025671 Theobroma cacao TCM_025671 I 0.000
TCM_042848 Theobroma cacao TCM_042848 N 0.000
TCM_042799 Theobroma cacao TCM_042799 I 0.000
TCM_026842 Theobroma cacao TCM_026842 I 0.000
TCM_025676 Theobroma cacao TCM_025676 N 0.000
TCM_025670 Theobroma cacao TCM_025670 I 0.000
TCM_026845 Theobroma cacao TCM_026845 I 0.000
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.000