LjSGA_100986.1 (Lotus japonicus)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02178 (AT_hook) IPR017956 LjSGA_100986.1 T018112_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT

ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991 0.923
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW

WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991 0.846
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD

HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991 0.692
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT

ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991 0.615
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN

NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991 0.615
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW

ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991 0.615
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW

WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991 0.615
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW

WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991 0.615
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT

ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991 0.615
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW

WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991 0.538
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991 0.538
phf21ab
M01678_2.00
Danio rerio
NNNDNADW

WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991 0.538
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA

TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991 0.538
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD

HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991 0.538
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN

NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991 0.538
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH

DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991 0.538
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN

NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991 0.538
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN

NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991 0.462
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991 0.462
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN

NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991 0.462
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991 0.462
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN

NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991 0.400
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW

WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991 0.360
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW

WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991 0.346
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH

DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991 0.292
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991 0.269
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW

WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991 0.269
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991 0.269
Q7DLU9_PEA
M09772_2.00
Pisum sativum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991 0.231
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991 0.216
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW

WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991 0.211
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN

NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991 0.211
HMGA1
M09769_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991 0.205
HMGA1
M09770_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991 0.205
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN

NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991 0.179
HMGA2
M09771_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991 0.179
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH

DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991 0.154
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH

DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991 0.115
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY

RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991 0.115
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH

DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991 0.113
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN

NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991 0.099
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN

NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991 0.097
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW

WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991 0.000
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_100986.1 AT hook 64 76

Links

Other AT hook family TFs
Other Lotus japonicus TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAB34088 Xenopus laevis AAB34088 I 0.000
AAK54135 Xenopus tropicalis AAK54135 I 0.000
AAK54137 Xenopus laevis AAK54137 I 0.000
AAK54139 Xenopus laevis AAK54139 I 0.000
Aan_R012932 Calypte anna Aan_R012932 I 0.000
ACEP13085 Atta cephalotes ACEP13085 I 0.000
Afo_R005870 Aptenodytes forsteri Afo_R005870 I 0.000
Alligator_sinensis_CCG016283.1 Alligator sinensis Alligator_sinensis_CCG016283.1 I 0.000
BGIBMGA006230 Bombyx mori BGIBMGA006230 I 0.000
Brh_R006038 Buceros rhinoceros Brh_R006038 I 0.000
CapteG76255 Capitella teleta CapteG76255 I 0.000
Cflo_07707--XP_393944.1_APIME Camponotus floridanus Cflo_07707--XP_393944.1_APIME I 0.000
CGI_10027813 Crassostrea gigas CGI_10027813 I 0.000
CLEC007039 Cimex lectularius CLEC007039 I 0.000
ENSAMEG00000009606 Ailuropoda melanoleuca ENSAMEG00000009606 I 0.000
ENSAPLG00000003920 Anas platyrhynchos ENSAPLG00000003920 I 0.000
ENSCPOG00000014827 Cavia porcellus ENSCPOG00000014827 I 0.000
ENSCSAG00000014787 Chlorocebus sabaeus ENSCSAG00000014787 I 0.000
ENSFALG00000005762 Ficedula albicollis ENSFALG00000005762 I 0.000
ENSGALG00000015241 Gallus gallus ENSGALG00000015241 I 0.000
ENSGMOG00000002669 Gadus morhua ENSGMOG00000002669 I 0.000
ENSLACG00000005413 Latimeria chalumnae ENSLACG00000005413 I 0.000
ENSLOCG00000005992 Lepisosteus oculatus ENSLOCG00000005992 I 0.000
ENSMEUG00000009510 Macropus eugenii ENSMEUG00000009510 I 0.000
ENSMPUG00000010793 Mustela putorius furo ENSMPUG00000010793 I 0.000
ENSNLEG00000013421 Nomascus leucogenys ENSNLEG00000013421 I 0.000
ENSOARG00000013030 Ovis aries ENSOARG00000013030 I 0.000
ENSONIG00000009542 Oreochromis niloticus ENSONIG00000009542 I 0.000
ENSP00000020945-D1 Bos grunniens ENSP00000020945-D1 I 0.000
ENSP00000380034 Macaca fascicularis ENSP00000380034 I 0.000
ENSPANG00000017540 Papio anubis ENSPANG00000017540 I 0.000
ENSPFOG00000014336 Poecilia formosa ENSPFOG00000014336 I 0.000
ENSPPYG00000018578 Pongo abelii ENSPPYG00000018578 I 0.000
ENSPSIG00000016395 Pelodiscus sinensis ENSPSIG00000016395 I 0.000
ENSSHAG00000004205 Sarcophilus harrisii ENSSHAG00000004205 I 0.000
ENSSSCG00000024404 Sus scrofa ENSSSCG00000024404 I 0.000
ENSSSCG00000026570 Sus scrofa ENSSSCG00000026570 I 0.000
ENSSTOG00000028743 Ictidomys tridecemlineatus ENSSTOG00000028743 I 0.000
ENSXMAG00000019030 Xiphophorus maculatus ENSXMAG00000019030 I 0.000
esg Drosophila melanogaster FBgn0001981 D 0.000
estExt_fgenesh2_kg.C_190001 Branchiostoma floridae estExt_fgenesh2_kg.C_190001 I 0.000
GA17666 Drosophila pseudoobscura FBgn0077676 I 0.000
GA17994 Drosophila pseudoobscura FBgn0078003 I 0.000
GD21956 Drosophila simulans FBgn0193371 I 0.000
GD24004 Drosophila simulans FBgn0195364 I 0.000
GE19402 Drosophila yakuba FBgn0236745 I 0.000
GE20968 Drosophila yakuba FBgn0238253 I 0.000
GF14525 Drosophila ananassae FBgn0091552 I 0.000
GF15382 Drosophila ananassae FBgn0092407 I 0.000
Gfo_R012649 Geospiza fortis Gfo_R012649 I 0.000
GG24207 Drosophila erecta FBgn0116339 I 0.000
GG25158 Drosophila erecta FBgn0117283 I 0.000
GH13119 Drosophila grimshawi FBgn0120596 I 0.000
GH13754 Drosophila grimshawi FBgn0121230 I 0.000
GI17894 Drosophila mojavensis FBgn0140635 I 0.000
GI22651 Drosophila mojavensis FBgn0145379 I 0.000
GJ17399 Drosophila virilis FBgn0204571 I 0.000
GJ23203 Drosophila virilis FBgn0210305 I 0.000
GK18253 Drosophila willistoni FBgn0220252 I 0.000
GL26425 Drosophila persimilis FBgn0164007 I 0.000
GL26594 Drosophila persimilis FBgn0164176 I 0.000
GM14357 Drosophila sechellia FBgn0169282 I 0.000
HHAL006775-PA Halyomorpha halys HHAL006775-PA I 0.000
HMEL002306 Heliconius melpomene HMEL002306 I 0.000
KGM_17970 Danaus plexippus KGM_17970 I 0.000
L798_10614 Zootermopsis nevadensis L798_10614 I 0.000
LCUP006862 Lucilia cuprina LCUP006862 I 0.000
LCUP013268 Lucilia cuprina LCUP013268 I 0.000
LDEC001157 Leptinotarsa decemlineata LDEC001157 I 0.000
LotgiG114290 Lottia gigantea LotgiG114290 I 0.000
MCINX001355 Melitaea cinxia MCINX001355 I 0.000
MDOA006149 Musca domestica MDOA006149 I 0.000
MDOA014024 Musca domestica MDOA014024 I 0.000
Myotis_brandtii_Snai2_10018131 Myotis brandtii Myotis_brandtii_Snai2_10018131 I 0.000
NV17743 Nasonia vitripennis NV17743 I 0.000
Ogr04681 Ophisaurus gracilis Ogr04681 I 0.000
PHUM091060 Pediculus humanus PHUM091060 I 0.000
PPAI008011 Phlebotomus papatasi PPAI008011 I 0.000
Pvit_15376 Pogona vitticeps Pvit_15376 I 0.000
RPRC005707 Rhodnius prolixus RPRC005707 I 0.000
Sakowv30043351m.g Saccoglossus kowalevskii Sakowv30043351m.g I 0.000
SINV14155 Solenopsis invicta SINV14155 I 0.000
SMAR001314 Strigamia maritima SMAR001314 I 0.000
SMAR001730 Strigamia maritima SMAR001730 I 0.000
SNAI2 Homo sapiens ENSG00000019549 D 0.000
SNAI2 Gorilla gorilla ENSGGOG00000000959 I 0.000
SNAI2 Anolis carolinensis ENSACAG00000012332 I 0.000
SNAI2 Loxodonta africana ENSLAFG00000009299 I 0.000
SNAI2 Equus caballus ENSECAG00000010120 I 0.000
SNAI2 Meleagris gallopavo ENSMGAG00000010813 I 0.000
SNAI2 Microcebus murinus ENSMICG00000000335 I 0.000
SNAI2 Felis catus ENSFCAG00000015779 I 0.000
SNAI2 Dasypus novemcinctus ENSDNOG00000035997 I 0.000
snai2 Danio rerio ENSDARG00000040046 I 0.000
SNAI2 Callithrix jacchus ENSCJAG00000013499 I 0.000
SNAI2 Choloepus hoffmanni ENSCHOG00000007046 I 0.000
SNAI2 Canis familiaris ENSCAFG00000006638 I 0.000
snai2 Xenopus tropicalis XB-GENE-487371 I 0.000
SNAI2 Bos taurus ENSBTAG00000013227 I 0.000
SNAI2 Myotis lucifugus ENSMLUG00000001086 I 0.000
SNAI2 Macaca mulatta ENSMMUG00000016195 I 0.000
SNAI2 Monodelphis domestica ENSMODG00000010173 I 0.000
SNAI2 Pan troglodytes ENSPTRG00000020235 I 0.000
snai2 Takifugu rubripes ENSTRUG00000006860 I 0.000
snai2 Tetraodon nigroviridis ENSTNIG00000008504 I 0.000
SNAI2 Taeniopygia guttata ENSTGUG00000010914 I 0.000
Snai2 Rattus norvegicus ENSRNOG00000047699 I 0.000
SNAI2 Pteropus vampyrus ENSPVAG00000009457 I 0.000
SNAI2 Procavia capensis ENSPCAG00000001788 I 0.000
snai2 Oryzias latipes ENSORLG00000017475 I 0.000
Snai2 Mus musculus ENSMUSG00000022676 D 0.000
SNAI2 Otolemur garnettii ENSOGAG00000010500 I 0.000
SNAI2 Oryctolagus cuniculus ENSOCUG00000012254 I 0.000
SNAI2 Ornithorhynchus anatinus ENSOANG00000007267 I 0.000
snai2.L Xenopus laevis XB-GENE-6255814 I 0.000
snai2.S Xenopus laevis XB-GENE-865699 I 0.000
Tal_R003673 Tyto alba Tal_R003673 I 0.000
TC014474 Tribolium castaneum TC014474 I 0.000
tetur13g00760 Tetranychus urticae tetur13g00760 I 0.000
wor Drosophila melanogaster FBgn0001983 D 0.000
YQE_07640 Dendroctonus ponderosae YQE_07640 I 0.000