snap_masked-nMf.1.1.scaf25146-processed-gene-0.1 (Meloidogyne floridensis)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02178 (AT_hook) IPR017956 snap_masked-nMf.1.1.scaf25146-processed-gene-0.1 T018220_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
phf21ab
M01678_2.00
Danio rerio
NNNDNADW

WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991 0.692
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW

ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991 0.692
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW

WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991 0.692
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD

HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991 0.615
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT

ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991 0.615
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA

TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991 0.615
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW

WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991 0.615
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991 0.615
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT

ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991 0.615
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW

WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991 0.538
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991 0.538
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD

HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991 0.538
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN

NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991 0.538
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH

DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991 0.538
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN

NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991 0.538
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT

ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991 0.538
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW

WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991 0.538
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN

NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991 0.462
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH

DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991 0.333
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW

WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991 0.308
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991 0.308
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW

WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991 0.308
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991 0.308
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW

WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991 0.280
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN

NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991 0.280
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN

NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991 0.269
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991 0.269
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN

NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991 0.269
Q7DLU9_PEA
M09772_2.00
Pisum sativum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991 0.269
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN

NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991 0.211
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991 0.189
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW

WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991 0.184
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN

NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991 0.179
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH

DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991 0.179
HMGA2
M09771_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991 0.179
HMGA1
M09769_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991 0.179
HMGA1
M09770_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991 0.179
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY

RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991 0.154
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH

DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991 0.135
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH

DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991 0.129
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN

NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991 0.113
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN

NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991 0.086
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW

WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991 0.000
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
snap_masked-nMf.1.1.scaf25146-processed-gene-0.1-mRNA-1 AT hook 1 13

Links

Other AT hook family TFs
Other Meloidogyne floridensis TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAB05479 Xenopus laevis AAB05479 I 0.000
AAEL006419 Aedes aegypti AAEL006419 I 0.000
AALB007981 Anopheles albimanus AALB007981 I 0.000
Aan_R011115 Calypte anna Aan_R011115 I 0.000
AARA009493 Anopheles arabiensis AARA009493 I 0.000
AATE009298 Anopheles atroparvus AATE009298 I 0.000
ACEP17167 Atta cephalotes ACEP17167 I 0.000
ACOM040639 Anopheles coluzzii ACOM040639 I 0.000
ACUA014515 Anopheles culicifacies ACUA014515 I 0.000
ACYPI001225 Acyrthosiphon pisum ACYPI001225 I 0.000
ACYPI009607 Acyrthosiphon pisum ACYPI009607 I 0.000
ADAC001896 Anopheles darlingi ADAC001896 I 0.000
ADIR011431 Anopheles dirus ADIR011431 I 0.000
AEPI005106 Anopheles epiroticus AEPI005106 I 0.000
AFAF012186 Anopheles farauti AFAF012186 I 0.000
Afo_R009248 Aptenodytes forsteri Afo_R009248 I 0.000
AFUN007280 Anopheles funestus AFUN007280 I 0.000
AGAP008935 Anopheles gambiae AGAP008935 I 0.000
Alligator_sinensis_CCG006987.1 Alligator sinensis Alligator_sinensis_CCG006987.1 I 0.000
AMAM009373 Anopheles maculatus AMAM009373 I 0.000
AMEC017285 Anopheles melas AMEC017285 I 0.000
AMEM004324 Anopheles merus AMEM004324 I 0.000
AMIN005880 Anopheles minimus AMIN005880 I 0.000
AQUA011533 Anopheles quadriannulatus AQUA011533 I 0.000
ASIS021327 Anopheles sinensis ASIS021327 I 0.000
ASTEI01929 Anopheles stephensi ASTEI01929 I 0.000
augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 I 0.000
BGIBMGA003113 Bombyx mori BGIBMGA003113 I 0.000
Brh_R001357 Buceros rhinoceros Brh_R001357 I 0.000
BTMF_0000429201 Brugia timori BTMF_0000429201 I 0.000
CapteG179039 Capitella teleta CapteG179039 I 0.000
Cflo_01916--XP_397309.1_APIME Camponotus floridanus Cflo_01916--XP_397309.1_APIME I 0.000
CGI_10018383 Crassostrea gigas CGI_10018383 I 0.000
CLEC005205 Cimex lectularius CLEC005205 I 0.000
Cmyd_10010997 Chelonia mydas Cmyd_10010997 I 0.000
CPIJ004183 Culex quinquefasciatus CPIJ004183 I 0.000
CpipJ_CPIJ004183 Culex pipiens CpipJ_CPIJ004183 I 0.000
D915_08967 Fasciola hepatica D915_08967 I 0.000
D915_08968 Fasciola hepatica D915_08968 I 0.000
DAPPUDRAFT_98470 Daphnia pulex DAPPUDRAFT_98470 I 0.000
DILT_0001372901 Diphyllobothrium latum DILT_0001372901 I 0.000
ENSAMEG00000018082 Ailuropoda melanoleuca ENSAMEG00000018082 I 0.000
ENSAMXG00000010835 Astyanax mexicanus ENSAMXG00000010835 I 0.000
ENSAMXG00000011180 Astyanax mexicanus ENSAMXG00000011180 I 0.000
ENSAPLG00000007512 Anas platyrhynchos ENSAPLG00000007512 I 0.000
ENSBTAP00000004696-D1 Bos grunniens ENSBTAP00000004696-D1 I 0.000
ENSFALG00000009154 Ficedula albicollis ENSFALG00000009154 I 0.000
ENSGMOG00000004951 Gadus morhua ENSGMOG00000004951 I 0.000
ENSGMOG00000006156 Gadus morhua ENSGMOG00000006156 I 0.000
ENSLACG00000007296 Latimeria chalumnae ENSLACG00000007296 I 0.000
ENSLOCG00000009731 Lepisosteus oculatus ENSLOCG00000009731 I 0.000
ENSMPUG00000016715 Mustela putorius furo ENSMPUG00000016715 I 0.000
ENSNLEG00000016895 Nomascus leucogenys ENSNLEG00000016895 I 0.000
ENSOARG00000008166 Ovis aries ENSOARG00000008166 I 0.000
ENSONIG00000008873 Oreochromis niloticus ENSONIG00000008873 I 0.000
ENSONIG00000009281 Oreochromis niloticus ENSONIG00000009281 I 0.000
ENSP00000354528 Macaca fascicularis ENSP00000354528 I 0.000
ENSPANG00000021176 Papio anubis ENSPANG00000021176 I 0.000
ENSPFOG00000012004 Poecilia formosa ENSPFOG00000012004 I 0.000
ENSPFOG00000016494 Poecilia formosa ENSPFOG00000016494 I 0.000
ENSPPYG00000014652 Pongo abelii ENSPPYG00000014652 I 0.000
ENSPPYG00000019874 Pongo abelii ENSPPYG00000019874 I 0.000
ENSPSIG00000016822 Pelodiscus sinensis ENSPSIG00000016822 I 0.000
ENSSHAG00000003329 Sarcophilus harrisii ENSSHAG00000003329 I 0.000
ENSSTOG00000004547 Ictidomys tridecemlineatus ENSSTOG00000004547 I 0.000
ENSTSYG00000001894 Tarsius syrichta ENSTSYG00000001894 I 0.000
ENSVPAG00000005031 Vicugna pacos ENSVPAG00000005031 I 0.000
ENSXMAG00000009877 Xiphophorus maculatus ENSXMAG00000009877 I 0.000
ENSXMAG00000012207 Xiphophorus maculatus ENSXMAG00000012207 I 0.000
fgenesh2_pg.scaffold_60000013 Branchiostoma floridae fgenesh2_pg.scaffold_60000013 I 0.000
fgenesh2_pg.scaffold_82000019 Branchiostoma floridae fgenesh2_pg.scaffold_82000019 I 0.000
GA25242 Drosophila pseudoobscura FBgn0246623 I 0.000
GA25243 Drosophila pseudoobscura FBgn0246624 I 0.000
GB45655 Apis mellifera GB45655 I 0.000
GE20814 Drosophila yakuba FBgn0238107 I 0.000
GF14905 Drosophila ananassae FBgn0091930 I 0.000
Gfo_R010339 Geospiza fortis Gfo_R010339 I 0.000
GG25142 Drosophila erecta FBgn0117267 I 0.000
GH10915 Drosophila grimshawi FBgn0118396 I 0.000
GJ11880 Drosophila virilis FBgn0199134 I 0.000
GL26026 Drosophila persimilis FBgn0163608 I 0.000
GM15894 Drosophila sechellia FBgn0170810 I 0.000
GPLIN_001569000 Globodera pallida GPLIN_001569000 I 0.000
HelroG186992 Helobdella robusta HelroG186992 I 0.000
HHAL001644-PA Halyomorpha halys HHAL001644-PA I 0.000
HMEL017244 Heliconius melpomene HMEL017244 I 0.000
Hsal_09918--XP_397309.1_APIME Harpegnathos saltator Hsal_09918--XP_397309.1_APIME I 0.000
ISCW010197 Ixodes scapularis ISCW010197 I 0.000
KGM_08407 Danaus plexippus KGM_08407 I 0.000
L798_15068 Zootermopsis nevadensis L798_15068 I 0.000
LCUP003485 Lucilia cuprina LCUP003485 I 0.000
LDEC018359 Leptinotarsa decemlineata LDEC018359 I 0.000
LLOJ000758 Lutzomyia longipalpis LLOJ000758 I 0.000
LLOJ000759 Lutzomyia longipalpis LLOJ000759 I 0.000
LotgiG159505 Lottia gigantea LotgiG159505 I 0.000
MDOA002342 Musca domestica MDOA002342 I 0.000
MESCA005881 Megaselia scalaris MESCA005881 I 0.000
Myotis_brandtii_RBPJ_10027377 Myotis brandtii Myotis_brandtii_RBPJ_10027377 I 0.000
NECAME_17145 Necator americanus NECAME_17145 I 0.000
NEMVEDRAFT_v1g206550 Nematostella vectensis NEMVEDRAFT_v1g206550 N 0.000
NV17858 Nasonia vitripennis NV17858 I 0.000
NV17967 Nasonia vitripennis NV17967 I 0.000
Ocbimv22031643m.g Octopus bimaculoides Ocbimv22031643m.g I 0.000
Ogr02745 Ophisaurus gracilis Ogr02745 I 0.000
PHUM462870 Pediculus humanus PHUM462870 I 0.000
PPAI000792 Phlebotomus papatasi PPAI000792 I 0.000
Pvit_10584 Pogona vitticeps Pvit_10584 I 0.000
rbpj Xenopus tropicalis XB-GENE-490756 I 0.000
RBPJ Callithrix jacchus ENSCJAG00000021033 I 0.000
RBPJ Anolis carolinensis ENSACAG00000014578 I 0.000
RBPJ Loxodonta africana ENSLAFG00000000410 I 0.000
RBPJ Meleagris gallopavo ENSMGAG00000012418 I 0.000
RBPJ Myotis lucifugus ENSMLUG00000017187 I 0.000
RBPJ Macaca mulatta ENSMMUG00000015828 I 0.000
RBPJ Monodelphis domestica ENSMODG00000000129 I 0.000
Rbpj Mus musculus ENSMUSG00000039191 D 0.000
RBPJ Ornithorhynchus anatinus ENSOANG00000006699 I 0.000
RBPJ Oryctolagus cuniculus ENSOCUG00000013449 I 0.000
RBPJ Otolemur garnettii ENSOGAG00000007913 I 0.000
RBPJ Gorilla gorilla ENSGGOG00000004582 I 0.000
RBPJ Gallus gallus ENSGALG00000014365 I 0.000
RBPJ Canis familiaris ENSCAFG00000016387 I 0.000
RBPJ Choloepus hoffmanni ENSCHOG00000001582 I 0.000
RBPJ Cavia porcellus ENSCPOG00000007041 I 0.000
RBPJ Dasypus novemcinctus ENSDNOG00000035383 I 0.000
Rbpj Dipodomys ordii ENSDORG00000006352 I 0.000
RBPJ Equus caballus ENSECAG00000019257 I 0.000
RBPJ Erinaceus europaeus ENSEEUG00000009686 I 0.000
RBPJ Felis catus ENSFCAG00000030363 I 0.000
RBPJ Homo sapiens ENSG00000168214 D 0.000
RBPJ Pan troglodytes ENSPTRG00000015968 I 0.000
RBPJ Bos taurus ENSBTAG00000003602 I 0.000
RBPJ Tetraodon nigroviridis ENSTNIG00000012994 I 0.000
RBPJ Tursiops truncatus ENSTTRG00000009022 I 0.000
RBPJ Taeniopygia guttata ENSTGUG00000009245 I 0.000
RBPJ Tupaia belangeri ENSTBEG00000002676 I 0.000
RBPJ Sus scrofa ENSSSCG00000022155 I 0.000
RBPJ Sorex araneus ENSSARG00000001169 I 0.000
Rbpj Rattus norvegicus ENSRNOG00000007797 I 0.000
Rbpj Rattus norvegicus ENSRNOG00000046327 I 0.000
RBPJ Pteropus vampyrus ENSPVAG00000014199 I 0.000
RBPJ Takifugu rubripes ENSTRUG00000014798 I 0.000
rbpj.S Xenopus laevis XB-GENE-865998 I 0.000
rbpja Danio rerio ENSDARG00000003398 I 0.000
rbpja Gasterosteus aculeatus ENSGACG00000015888 I 0.000
rbpja Oryzias latipes ENSORLG00000004882 I 0.000
rbpjb Danio rerio ENSDARG00000052091 I 0.000
Sakowv30027441m.g Saccoglossus kowalevskii Sakowv30027441m.g I 0.000
scaffold595-EXSNAP2012.9 Pristionchus exspectatus scaffold595-EXSNAP2012.9 I 0.000
SCUD_0000326701 Schistosoma curassoni SCUD_0000326701 I 0.000
SINV15808 Solenopsis invicta SINV15808 I 0.000
Sjc_0108400 Schistosoma japonicum Sjc_0108400 I 0.000
SMAR001432 Strigamia maritima SMAR001432 I 0.000
SMRZ_0000802101 Schistosoma margrebowiei SMRZ_0000802101 I 0.000
SMTD_0001089601 Schistosoma mattheei SMTD_0001089601 I 0.000
SPER_0003199901 Spirometra erinaceieuropaei SPER_0003199901 I 0.000
Su(H) Drosophila simulans FBgn0027417 I 0.000
Su(H) Drosophila melanogaster FBgn0004837 D 0.000
Tal_R001466 Tyto alba Tal_R001466 I 0.000
TC014468 Tribolium castaneum TC014468 I 0.000
tetur04g02700 Tetranychus urticae tetur04g02700 I 0.000
tetur04g02730 Tetranychus urticae tetur04g02730 I 0.000
tetur11g00180 Tetranychus urticae tetur11g00180 I 0.000
TRE_0000568701 Trichobilharzia regenti TRE_0000568701 I 0.000
YQE_03219 Dendroctonus ponderosae YQE_03219 I 0.000