SVE_1906400 (Strongyloides venezuelensis)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02178 (AT_hook) IPR017956 SVE_1906400 T018247_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
athp-3
M01691_2.00
Caenorhabditis elegans
NNDDWDH

DHWHHNN
PBM
Weirauch et al.(2014)
pTH9097
0.991 0.536
NCU01145
M01693_2.00
Neurospora crassa
RWATAWWTNN

NNAWWTATWY
PBM
Weirauch et al.(2014)
pTH8916
0.991 0.482
HMG-I Y
M02652_2.00
Pisum sativum
NDWVAAANRVMRWMAY

RTKWYKBYNTTTBWHN
SELEX
Mathelier et al.(2014)
MA0045.1
0.991 0.393
HMGA
M01671_2.00
Arabidopsis thaliana
NNNNDWAWH

DWTWHNNNN
PBM
Weirauch et al.(2014)
pTH7395
0.991 0.375
NCU05635
M01694_2.00
Neurospora crassa
NNNWWWWNNN

NNNWWWWNNN
PBM
Weirauch et al.(2014)
pTH8863
0.991 0.375
hmg-12
M01690_2.00
Caenorhabditis elegans
NNAWWTAWWTNN

NNAWWTAWWTNN
PBM
Weirauch et al.(2014)
pTH8997
0.991 0.370
ANIA_01690
M01675_2.00
Aspergillus nidulans
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH8216
0.991 0.339
Hmga2
M00751_2.00
Mus musculus
NNNNRHWWNN

NNWWDYNNNN
PBM
Weirauch et al.(2013)
pTH3046
0.991 0.339
ENSPPYG00000004736
M01685_2.00
Pongo abelii
NNNNDWWW

WWWHNNNN
PBM
Weirauch et al.(2014)
pTH9279
0.991 0.339
HMGA2
M09771_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGA2_01
0.991 0.339
HMGA1
M09769_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_01
0.991 0.339
HMGA1
M09770_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMGIY_Q4
0.991 0.339
FGRRES_17512
M01105_2.00
Fusarium graminearum
NNNDNWWWW

WWWWNHNNN
PBM
Lambert et al.(2019)
pTH11412
0.991 0.304
TVAG_474020
M01106_2.00
Trichomonas vaginalis
DNWWWAWW

WWTWWWNH
PBM
Lambert et al.(2019)
pTH11493
0.991 0.304
FGRRES_05233
M01104_2.00
Fusarium graminearum
NNNDWWAWWH

DWWTWWHNNN
PBM
Lambert et al.(2019)
pTH11377
0.991 0.286
VIT_08s0007g04020
M01689_2.00
Vitis vinifera
DBNDDDDDDN

NHHHHHHNVH
PBM
Weirauch et al.(2014)
pTH9295
0.991 0.286
AHL13
M01672_2.00
Arabidopsis thaliana
NAWWTAWWWN

NWWWTAWWTN
PBM
Weirauch et al.(2014)
pTH8202
0.991 0.268
BRADI3G55950
M01673_2.00
Brachypodium distachyon
NNNNRHDDN

NHHDYNNNN
PBM
Weirauch et al.(2014)
pTH9369
0.991 0.268
OS02G0824300
M01688_2.00
Oryza sativa
NNDWAWWN

NWWTWHNN
PBM
Weirauch et al.(2014)
pTH8406
0.991 0.268
SUM1
M00008_2.00
Saccharomyces cerevisiae
NNDWWWH

DWWWHNN
PBM
Badis et al.(2008)
SUM1_2124
0.991 0.214
SUM1
M07439_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1
0.991 0.214
SUM1
M08478_2.00
Saccharomyces cerevisiae
RYGWCASWAAW

WTTWSTGWCRY
Misc
DeBoer et al.(2011)
YDR310C_383
0.991 0.214
SUM1
M08479_2.00
Saccharomyces cerevisiae
DWAAATWWN

NWWATTTWH
Misc
DeBoer et al.(2011)
YDR310C_478
0.991 0.214
Q7DLU9_PEA
M09772_2.00
Pisum sativum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HMGIY_01
0.991 0.196
BRADI5G22430
M01674_2.00
Brachypodium distachyon
VNRDDDHDD

HHDHHHYNB
PBM
Weirauch et al.(2014)
pTH9242
0.991 0.161
Setbp1
M01683_2.00
Mus musculus
NDNNNNNNHN

NDNNNNNNHN
PBM
Weirauch et al.(2014)
pTH1294
0.991 0.161
MTR_4g101990
M01687_2.00
Medicago truncatula
AAAWTAAT

ATTAWTTT
PBM
Weirauch et al.(2014)
pTH9209
0.991 0.161
estExt_fgeneshNG_pg.C_820014
M01692_2.00
Naegleria gruberi
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9380
0.991 0.161
PK00377.1
M01107_2.00
Cannabis sativa
DAWWWAWW

WWTWWWTH
PBM
Lambert et al.(2019)
pTH11338
0.991 0.161
PK26376.1
M01108_2.00
Cannabis sativa
DDWWWAWW

WWTWWWHH
PBM
Lambert et al.(2019)
pTH11261
0.991 0.161
kmt2cb
M01679_2.00
Danio rerio
WWAWAWAT

ATWTWTWW
PBM
Weirauch et al.(2014)
pTH7876
0.991 0.143
ATEG_07399
M01676_2.00
Aspergillus terreus
DHNNHNDWWW

WWWHNDNNDH
PBM
Weirauch et al.(2014)
pTH9237
0.991 0.125
ENSACAG00000014978
M01677_2.00
Anolis carolinensis
NNNNNDRH

DYHNNNNN
PBM
Weirauch et al.(2014)
pTH9222
0.991 0.125
phf21ab
M01680_2.00
Gasterosteus aculeatus
AAAAWAAA

TTTWTTTT
PBM
Weirauch et al.(2014)
pTH9180
0.991 0.125
PHF21A
M01681_2.00
Meleagris gallopavo
HDNHNNDNHD

HDNHNNDNHD
PBM
Weirauch et al.(2014)
pTH7875
0.991 0.125
PHF21A
M01103_2.00
Monodelphis domestica
NNNAWATWAATN

NATTWATWTNNN
PBM
Lambert et al.(2019)
pTH9309
0.991 0.125
PHF21A
M01682_2.00
Monodelphis domestica
NNNNNHRH

DYDNNNNN
PBM
Weirauch et al.(2014)
pTH9335
0.991 0.125
Ahctf1
M00750_2.00
Mus musculus
AAAWAWAW

ATWTWTTT
PBM
Weirauch et al.(2013)
pTH2361
0.991 0.125
Phf21a
M01684_2.00
Mus musculus
NNNATATWAATN

NATTWATATNNN
PBM
Weirauch et al.(2014)
pTH8550
0.991 0.125
Xrp1
M01686_2.00
Drosophila melanogaster
NNNNDWAWW

WWTWHNNNN
PBM
Weirauch et al.(2014)
pTH9260
0.991 0.125
Xrp1
M05900_2.00
Drosophila melanogaster
RTKRYGYAAT

ATTRCRYMAY
B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113
0.991 0.125
phf21ab
M01678_2.00
Danio rerio
NNNDNADW

WHTNHNNN
PBM
Weirauch et al.(2014)
pTH9254
0.991 0.107
SUM1
M01517_2.00
Saccharomyces cerevisiae
NNNDWAWW

WWTWHNNN
PBM
Zhu et al.(2009)
Sum1
0.991 0.000
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVE_1906400.1 AT hook 23 31
SVE_1906400.1 AT hook 89 101
SVE_1906400.1 AT hook 176 186
SVE_1906400.1 AT hook 348 359
SVE_1906400.1 AT hook 392 402

Links

Other AT hook family TFs
Other Strongyloides venezuelensis TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ANCCAN_21647 Ancylostoma caninum ANCCAN_21647 N 0.000
ANCDUO_12756 Ancylostoma duodenale ANCDUO_12756 N 0.000
CJA17319 Caenorhabditis japonica CJA17319 N 0.000
CRE01078 Caenorhabditis remanei CRE01078 N 0.000
DICVIV_10568 Dictyocaulus viviparus DICVIV_10568 N 0.000
HCOI01730700 Haemonchus contortus HCOI01730700 N 0.000
HPBE_0001987701 Heligmosomoides bakeri HPBE_0001987701 N 0.000
NBR_0001684501 Nippostrongylus brasiliensis NBR_0001684501 N 0.000
SVUK_0001376701 Strongylus vulgaris SVUK_0001376701 N 0.000
SVUK_0002086401 Strongylus vulgaris SVUK_0002086401 N 0.000