CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0114s0069
(
Capsella grandiflora
)
AT hook,MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02178 (AT_hook)
PF01429 (MBD)
IPR017956
IPR001739
Cagra.0114s0069
T018306_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0114s0069.1.p
AT hook
184
196
KRKRGRPRKIQNP
Cagra.0114s0069.1.p
AT hook
238
250
KRKRGRPPKNRNA
Cagra.0114s0069.1.p
MBD
349
410
FGGYLPKGWKLMLYIKRKGSNMLLACRRYVSPDGQQFETCKEISTYLQFLLVSRSKNRLNSL
Cagra.0114s0069.2.p
AT hook
83
95
KRKRGRPRKIQNP
Cagra.0114s0069.2.p
AT hook
137
149
KRKRGRPPKNRNA
Cagra.0114s0069.2.p
MBD
248
310
FGGYLPKGWKLMLYIKRKGSNMLLACRRYVSPDGQQFETCKEISTYLQFLLVSRSKNRLNSLQ
Links
Other
AT hook,MBD
family TFs
Other
Capsella grandiflora
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MBD8
Arabidopsis thaliana
AT1G22310
N
0.765
MBD8
Arabidopsis lyrata
fgenesh2_kg.1__2425__AT1G22310.2
N
0.729