CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene28662-v1.0-hybrid
(
Fragaria vesca
)
AT hook,MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02178 (AT_hook)
PF01429 (MBD)
IPR017956
IPR001739
gene28662-v1.0-hybrid
T018307_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna28662.1-v1.0-hybrid
AT hook
164
174
KRKRGRPRKDS
mrna28662.1-v1.0-hybrid
AT hook
238
249
KRKRGRPRKDEV
mrna28662.1-v1.0-hybrid
MBD
338
405
IVQASELGDLLPKWWKIMLSLKRNGGHKSLVCRRFISPNGLEFVSCKEVSSYLHSYFGLGSQSNPVHT
Links
Other
AT hook,MBD
family TFs
Other
Fragaria vesca
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pm004568
Prunus mume
Pm004568
N
0.791