AMTR_s00148p00046020 (Amborella trichopoda)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 AMTR_s00148p00046020 T018363_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF16
M06708_2.00
Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA

TTTTYCCGCCAAAAMCGTAAA
Dap-seq
OMalley et al.(2016)
ARF16_col_b
0.816 0.816
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN08367 B3 129 231

Links

Other B3 family TFs
Other Amborella trichopoda TFs

206 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARF16 Arabidopsis thaliana AT4G30080 D 0.816
Carubv10022755m.g Capsella rubella Carubv10022755m.g I 0.806
Cucsa.137650 Cucumis sativus Cucsa.137650 I 0.806
Cucsa.124410 Cucumis sativus Cucsa.124410 I 0.847
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I 0.837
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I 0.825
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I 0.835
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I 0.847
30078.m002329 Ricinus communis 30078.m002329 I 0.856
27538.m000327 Ricinus communis 27538.m000327 I 0.827
27494.m000045 Ricinus communis 27494.m000045 I 0.796
Pm031275 Prunus mume Pm031275 I 0.837
Cucsa.386060 Cucumis sativus Cucsa.386060 I 0.804
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I 0.804
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I 0.827
Carubv10004220m.g Capsella rubella Carubv10004220m.g I 0.816
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I 0.806
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I 0.816
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I 0.816
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I 0.806
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I 0.847
mgf024607m Mimulus guttatus mgf024607m I 0.814
mgf016139m Mimulus guttatus mgf016139m I 0.833
mgf005300m Mimulus guttatus mgf005300m I 0.856
mgf000336m Mimulus guttatus mgf000336m I 0.796
Pm030120 Prunus mume Pm030120 I 0.847
Pm018533 Prunus mume Pm018533 I 0.814
Cla018574 Citrullus lanatus Cla018574 I 0.847
TCM_029792 Theobroma cacao TCM_029792 I 0.717
TCM_022163 Theobroma cacao TCM_022163 I 0.856
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I 0.845
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I 0.714
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I 0.847
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I 0.796
Si034525m.g Setaria italica Si034525m.g I 0.866
Si016509m.g Setaria italica Si016509m.g I 0.823
Si009541m.g Setaria italica Si009541m.g I 0.732
Si005991m.g Setaria italica Si005991m.g I 0.856
TCM_042067 Theobroma cacao TCM_042067 I 0.845
TCM_043157 Theobroma cacao TCM_043157 I 0.837
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I 0.750
Cla013979 Citrullus lanatus Cla013979 I 0.814
Cla008883 Citrullus lanatus Cla008883 I 0.804
Ca_26121 Cicer arietinum Ca_26121 I 0.827
Ca_17136 Cicer arietinum Ca_17136 I 0.827
Ca_08488 Cicer arietinum Ca_08488 I 0.724
Ca_02541 Cicer arietinum Ca_02541 I 0.844
ARF16 Vitis vinifera VIT_13s0019g04380 I 0.816
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I 0.827
ARF10 Vitis vinifera VIT_06s0004g02750 I 0.837
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I 0.722
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I 0.866
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I 0.842
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I 0.776
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I 0.816
Pavir.J26437 Panicum virgatum Pavir.J26437 I 0.856
Pavir.J24081 Panicum virgatum Pavir.J24081 I 0.750
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I 0.842
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I 0.750
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I 0.845
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I 0.835
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I 0.847
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I 0.804
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I 0.845
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I 0.856
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I 0.835
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I 0.707
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I 0.725
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I 0.825
PK17007.1 Cannabis sativa PK17007.1 I 0.856
PK13393.1 Cannabis sativa PK13393.1 I 0.816
PK13064.1 Cannabis sativa PK13064.1 I 0.814
PK10136.1 Cannabis sativa PK10136.1 I 0.745
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I 0.816
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I 0.806
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I 0.814
MDP0000750392 Malus domestica MDP0000750392 I 0.835
MDP0000221322 Malus domestica MDP0000221322 I 0.845
MDP0000131481 Malus domestica MDP0000131481 I 0.845
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I 0.827
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I 0.847
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I 0.845
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I 0.806
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I 0.837
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I 0.847
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I 0.814
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I 0.714
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I 0.835
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I 0.804
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I 0.796
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I 0.827
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I 0.856
Lus10040403.g Linum usitatissimum Lus10040403.g I 0.786
Lus10026510.g Linum usitatissimum Lus10026510.g I 0.845
Lus10023519.g Linum usitatissimum Lus10023519.g I 0.786
Lus10021467.g Linum usitatissimum Lus10021467.g I 0.816
Lus10019940.g Linum usitatissimum Lus10019940.g I 0.845
Lus10016091.g Linum usitatissimum Lus10016091.g I 0.806
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I 0.786
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I 0.825
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I 0.786
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I 0.827
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I 0.847
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I 0.806
OBART04G18910 Oryza barthii OBART04G18910 I 0.735
LPERR04G15300 Leersia perrieri LPERR04G15300 I 0.753
LPERR02G20290 Leersia perrieri LPERR02G20290 I 0.796
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I 0.835
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I 0.857
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I 0.856
GRMZM2G390641 Zea mays GRMZM2G390641 I 0.776
GRMZM2G159399 Zea mays GRMZM2G159399 I 0.845
GRMZM2G153233 Zea mays GRMZM2G153233 I 0.856
GRMZM2G081406 Zea mays GRMZM2G081406 I 0.823
GLYMA20G32040 Glycine max GLYMA20G32040 I 0.786
LPERR06G21020 Leersia perrieri LPERR06G21020 I 0.796
LPERR10G09970 Leersia perrieri LPERR10G09970 I 0.857
MLOC_64795 Hordeum vulgare MLOC_64795 I 0.866
OB10G20590 Oryza brachyantha OB10G20590 I 0.857
OB06G32920 Oryza brachyantha OB06G32920 I 0.856
OB02G32150 Oryza brachyantha OB02G32150 I 0.823
MTR_7g101280 Medicago truncatula MTR_7g101280 I 0.745
MTR_4g058930 Medicago truncatula MTR_4g058930 I 0.827
MTR_2g094570 Medicago truncatula MTR_2g094570 I 0.816
MTR_1g094960 Medicago truncatula MTR_1g094960 I 0.806
MTR_1g064430 Medicago truncatula MTR_1g064430 I 0.827
MTR_0041s0110 Medicago truncatula MTR_0041s0110 I 0.745
MLOC_77438 Hordeum vulgare MLOC_77438 I 0.812
GLYMA19G36571 Glycine max GLYMA19G36571 I 0.796
GLYMA13G40030 Glycine max GLYMA13G40030 I 0.825
Bra011955 Brassica rapa Bra011955 I 0.806
Bra011162 Brassica rapa Bra011162 I 0.825
Bo7g114200 Brassica oleracea Bo7g114200 I 0.806
Bo4g071620 Brassica oleracea Bo4g071620 I 0.816
Bo1g014600 Brassica oleracea Bo1g014600 I 0.814
BGIOSGA033142 Oryza indica BGIOSGA033142 I 0.866
ARF10 Oryza indica BGIOSGA016767 I 0.735
BGIOSGA008657 Oryza indica BGIOSGA008657 I 0.796
ARF10 Arabidopsis thaliana AT2G28350 I 0.806
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I 0.837
Bra024109 Brassica rapa Bra024109 I 0.804
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I 0.837
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I 0.866
GLYMA13G20382 Glycine max GLYMA13G20382 I 0.845
GLYMA12G29720 Glycine max GLYMA12G29720 I 0.835
GLYMA12G08110 Glycine max GLYMA12G08110 I 0.816
GLYMA11G20490 Glycine max GLYMA11G20490 I 0.816
GLYMA10G35481 Glycine max GLYMA10G35481 I 0.804
GLYMA10G06080 Glycine max GLYMA10G06080 I 0.845
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I 0.806
F775_32978 Aegilops tauschii F775_32978 I 0.847
BRADI5G15904 Brachypodium distachyon BRADI5G15904 I 0.740
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I 0.812
AC207656.3_FG002 Zea mays AC207656.3_FG002 I 0.856
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I 0.806
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I 0.835
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I 0.796
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I 0.847
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I 0.844
ARF22 Oryza sativa OS10G0479900 I 0.866
ARF18 Oryza sativa OS06G0685700 I 0.856
OS04G0519700 Oryza sativa OS04G0519700 I 0.735
ARF8 Oryza sativa OS02G0628600 I 0.796
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I 0.866
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I 0.856
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I 0.794
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I 0.845
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I 0.845
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I 0.866
ARF16 Arabidopsis lyrata scaffold_701217.1 I 0.816
Sb10g027790 Sorghum bicolor Sb10g027790 I 0.856
Sb04g026610 Sorghum bicolor Sb04g026610 I 0.823
Sb01g019130 Sorghum bicolor Sb01g019130 I 0.866
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I 0.806
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I 0.847
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I 0.827
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I 0.835
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I 0.814
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I 0.707
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I 0.796
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I 0.866
OMERI06G25370 Oryza meridionalis OMERI06G25370 I 0.856
OMERI04G15770 Oryza meridionalis OMERI04G15770 I 0.735
OMERI02G24320 Oryza meridionalis OMERI02G24320 I 0.796
OLONG_021130 Oryza longistaminata OLONG_021130 I 0.806
OLONG_000617 Oryza longistaminata OLONG_000617 I 0.786
OMERI10G10210 Oryza meridionalis OMERI10G10210 I 0.866
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I 0.866
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I 0.856
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I 0.796
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I 0.735
OBART10G13410 Oryza barthii OBART10G13410 I 0.866
OBART06G25230 Oryza barthii OBART06G25230 I 0.856
ONIVA02G27180 Oryza nivara ONIVA02G27180 I 0.796
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I 0.856
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I 0.735
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I 0.796
OPUNC10G11840 Oryza punctata OPUNC10G11840 I 0.866
OPUNC06G22960 Oryza punctata OPUNC06G22960 I 0.856
OPUNC04G16630 Oryza punctata OPUNC04G16630 I 0.732
OPUNC02G22610 Oryza punctata OPUNC02G22610 I 0.796
ONIVA10G14700 Oryza nivara ONIVA10G14700 I 0.866
ONIVA06G31350 Oryza nivara ONIVA06G31350 I 0.735
ONIVA06G28270 Oryza nivara ONIVA06G28270 I 0.856
GLYMA04G43350 Glycine max GLYMA04G43350 N 0.714
MTR_3g073420 Medicago truncatula MTR_3g073420 N 0.724