ARF1 (Arabidopsis thaliana)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 AT1G59750 T018403_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G59750.1 B3 124 226
AT1G59750.1 B3 566 615
AT1G59750.2 B3 124 226
AT1G59750.2 B3 563 612
AT1G59750.3 B3 124 226
AT1G59750.3 B3 566 615
AT1G59750.4 B3 124 226
AT1G59750.4 B3 561 610

Links

Other B3 family TFs
Other Arabidopsis thaliana TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10007440.g Linum usitatissimum Lus10007440.g N 0.928
29609.m000587 Ricinus communis 29609.m000587 N 0.928
PRUPE_ppa002394mg Prunus persica PRUPE_ppa002394mg N 0.917
POPTR_0003s00890 Populus trichocarpa POPTR_0003s00890 N 0.910
Lus10024455.g Linum usitatissimum Lus10024455.g N 0.896
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.891
Cla001927 Citrullus lanatus Cla001927 N 0.890
Solyc01g103050.2 Solanum lycopersicum Solyc01g103050.2 N 0.883
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.883
SapurV1A.0225s0120 Salix purpurea SapurV1A.0225s0120 N 0.876
Cucsa.183410 Cucumis sativus Cucsa.183410 N 0.875
Bostr.10040s0256 Boechera stricta Bostr.10040s0256 N 0.870
Cagra.0996s0001 Capsella grandiflora Cagra.0996s0001 N 0.869
Bo1g090350 Brassica oleracea Bo1g090350 N 0.869
Carubv10022415m.g Capsella rubella Carubv10022415m.g N 0.869
Bra035427 Brassica rapa Bra035427 N 0.869
TCM_027113 Theobroma cacao TCM_027113 I 0.866
ARF1 Arabidopsis lyrata fgenesh2_kg.2__468__AT1G59750.1 N 0.862
Thhalv10023326m.g Eutrema salsugineum Thhalv10023326m.g N 0.862
Bo4g083590 Brassica oleracea Bo4g083590 N 0.855
Ciclev10000491m.g Citrus clementina Ciclev10000491m.g N 0.848
mgf006427m Mimulus guttatus mgf006427m N 0.838
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.814
cassava7099.valid.m1 Manihot esculenta cassava7099.valid.m1 N 0.807
cassava11455.m1 Manihot esculenta cassava11455.m1 N 0.807
cassava11456.m1 Manihot esculenta cassava11456.m1 N 0.807
cassava11454.m1 Manihot esculenta cassava11454.m1 N 0.807
cassava7098.valid.m1 Manihot esculenta cassava7098.valid.m1 N 0.807
cassava11453.m1 Manihot esculenta cassava11453.m1 N 0.807
GLYMA07G40270 Glycine max GLYMA07G40270 N 0.800
AMTR_s00021p00221770 Amborella trichopoda AMTR_s00021p00221770 N 0.800
GLYMA12G28550 Glycine max GLYMA12G28550 N 0.800
Pm003827 Prunus mume Pm003827 N 0.778
Gorai.011G091100 Gossypium raimondii Gorai.011G091100 N 0.772
Traes_2DL_A86E54838 Triticum aestivum Traes_2DL_A86E54838 N 0.768
29742.m001397 Ricinus communis 29742.m001397 N 0.766
Sb04g022830 Sorghum bicolor Sb04g022830 N 0.766
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.759
OBART12G11990 Oryza barthii OBART12G11990 N 0.752
OGLUM12G13560 Oryza glumaepatula OGLUM12G13560 N 0.752
BGIOSGA036199 Oryza indica BGIOSGA036199 N 0.752
OLONG_019549 Oryza longistaminata OLONG_019549 N 0.752
OMERI12G08550 Oryza meridionalis OMERI12G08550 N 0.752
ORGLA12G0109100 Oryza glaberrima ORGLA12G0109100 N 0.752
ARF24 Oryza sativa OS12G0479400 N 0.752
OPUNC12G10620 Oryza punctata OPUNC12G10620 N 0.752
ONIVA12G12070 Oryza nivara ONIVA12G12070 N 0.752
Si025988m.g Setaria italica Si025988m.g N 0.738
Cagra.1226s0063 Capsella grandiflora Cagra.1226s0063 N 0.731
Carubv10006513m.g Capsella rubella Carubv10006513m.g N 0.731
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.731
VIT_18s0089g00910 Vitis vinifera VIT_18s0089g00910 N 0.731
ORUFI12G13110 Oryza rufipogon ORUFI12G13110 N 0.731
Traes_2AL_89543BA1A Triticum aestivum Traes_2AL_89543BA1A N 0.731
TRIUR3_33501 Triticum urartu TRIUR3_33501 N 0.731
OGLUM02G20880 Oryza glumaepatula OGLUM02G20880 N 0.724
Sb05g019540 Sorghum bicolor Sb05g019540 N 0.722
BGIOSGA008429 Oryza indica BGIOSGA008429 N 0.717
OLONG_012362 Oryza longistaminata OLONG_012362 N 0.717
OBART02G20600 Oryza barthii OBART02G20600 N 0.717
OB01G51580 Oryza brachyantha OB01G51580 N 0.717
ARF7 Oryza sativa OS02G0557200 N 0.717
OMERI02G20310 Oryza meridionalis OMERI02G20310 N 0.717
ORUFI02G21640 Oryza rufipogon ORUFI02G21640 N 0.717
ONIVA02G22590 Oryza nivara ONIVA02G22590 N 0.717
ORGLA02G0176700 Oryza glaberrima ORGLA02G0176700 N 0.717
OPUNC02G18520 Oryza punctata OPUNC02G18520 N 0.717
GSMUA_Achr2G19760_001 Musa acuminata GSMUA_Achr2G19760_001 N 0.710