CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ARF1
(
Arabidopsis thaliana
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
AT1G59750
T018403_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G59750.1
B3
124
226
FCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHM
AT1G59750.1
B3
566
615
YEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGM
AT1G59750.2
B3
124
226
FCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHM
AT1G59750.2
B3
563
612
YEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGM
AT1G59750.3
B3
124
226
FCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHM
AT1G59750.3
B3
566
615
YEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGM
AT1G59750.4
B3
124
226
FCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHM
AT1G59750.4
B3
561
610
YEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGM
Links
Other
B3
family TFs
Other
Arabidopsis thaliana
TFs
69 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10007440.g
Linum usitatissimum
Lus10007440.g
N
0.928
29609.m000587
Ricinus communis
29609.m000587
N
0.928
PRUPE_ppa002394mg
Prunus persica
PRUPE_ppa002394mg
N
0.917
POPTR_0003s00890
Populus trichocarpa
POPTR_0003s00890
N
0.910
Lus10024455.g
Linum usitatissimum
Lus10024455.g
N
0.896
Eucgr.G00076
Eucalyptus grandis
Eucgr.G00076
I
0.891
Cla001927
Citrullus lanatus
Cla001927
N
0.890
Solyc01g103050.2
Solanum lycopersicum
Solyc01g103050.2
N
0.883
PGSC0003DMG400020711
Solanum tuberosum
PGSC0003DMG400020711
I
0.883
SapurV1A.0225s0120
Salix purpurea
SapurV1A.0225s0120
N
0.876
Cucsa.183410
Cucumis sativus
Cucsa.183410
N
0.875
Bostr.10040s0256
Boechera stricta
Bostr.10040s0256
N
0.870
Cagra.0996s0001
Capsella grandiflora
Cagra.0996s0001
N
0.869
Bo1g090350
Brassica oleracea
Bo1g090350
N
0.869
Carubv10022415m.g
Capsella rubella
Carubv10022415m.g
N
0.869
Bra035427
Brassica rapa
Bra035427
N
0.869
TCM_027113
Theobroma cacao
TCM_027113
I
0.866
ARF1
Arabidopsis lyrata
fgenesh2_kg.2__468__AT1G59750.1
N
0.862
Thhalv10023326m.g
Eutrema salsugineum
Thhalv10023326m.g
N
0.862
Bo4g083590
Brassica oleracea
Bo4g083590
N
0.855
Ciclev10000491m.g
Citrus clementina
Ciclev10000491m.g
N
0.848
mgf006427m
Mimulus guttatus
mgf006427m
N
0.838
SapurV1A.0422s0040
Salix purpurea
SapurV1A.0422s0040
I
0.814
cassava7099.valid.m1
Manihot esculenta
cassava7099.valid.m1
N
0.807
cassava11455.m1
Manihot esculenta
cassava11455.m1
N
0.807
cassava11456.m1
Manihot esculenta
cassava11456.m1
N
0.807
cassava11454.m1
Manihot esculenta
cassava11454.m1
N
0.807
cassava7098.valid.m1
Manihot esculenta
cassava7098.valid.m1
N
0.807
cassava11453.m1
Manihot esculenta
cassava11453.m1
N
0.807
GLYMA07G40270
Glycine max
GLYMA07G40270
N
0.800
AMTR_s00021p00221770
Amborella trichopoda
AMTR_s00021p00221770
N
0.800
GLYMA12G28550
Glycine max
GLYMA12G28550
N
0.800
Pm003827
Prunus mume
Pm003827
N
0.778
Gorai.011G091100
Gossypium raimondii
Gorai.011G091100
N
0.772
Traes_2DL_A86E54838
Triticum aestivum
Traes_2DL_A86E54838
N
0.768
29742.m001397
Ricinus communis
29742.m001397
N
0.766
Sb04g022830
Sorghum bicolor
Sb04g022830
N
0.766
MLOC_64596
Hordeum vulgare
MLOC_64596
I
0.759
OBART12G11990
Oryza barthii
OBART12G11990
N
0.752
OGLUM12G13560
Oryza glumaepatula
OGLUM12G13560
N
0.752
BGIOSGA036199
Oryza indica
BGIOSGA036199
N
0.752
OLONG_019549
Oryza longistaminata
OLONG_019549
N
0.752
OMERI12G08550
Oryza meridionalis
OMERI12G08550
N
0.752
ORGLA12G0109100
Oryza glaberrima
ORGLA12G0109100
N
0.752
ARF24
Oryza sativa
OS12G0479400
N
0.752
OPUNC12G10620
Oryza punctata
OPUNC12G10620
N
0.752
ONIVA12G12070
Oryza nivara
ONIVA12G12070
N
0.752
Si025988m.g
Setaria italica
Si025988m.g
N
0.738
Cagra.1226s0063
Capsella grandiflora
Cagra.1226s0063
N
0.731
Carubv10006513m.g
Capsella rubella
Carubv10006513m.g
N
0.731
BRADI4G17410
Brachypodium distachyon
BRADI4G17410
I
0.731
VIT_18s0089g00910
Vitis vinifera
VIT_18s0089g00910
N
0.731
ORUFI12G13110
Oryza rufipogon
ORUFI12G13110
N
0.731
Traes_2AL_89543BA1A
Triticum aestivum
Traes_2AL_89543BA1A
N
0.731
TRIUR3_33501
Triticum urartu
TRIUR3_33501
N
0.731
OGLUM02G20880
Oryza glumaepatula
OGLUM02G20880
N
0.724
Sb05g019540
Sorghum bicolor
Sb05g019540
N
0.722
BGIOSGA008429
Oryza indica
BGIOSGA008429
N
0.717
OLONG_012362
Oryza longistaminata
OLONG_012362
N
0.717
OBART02G20600
Oryza barthii
OBART02G20600
N
0.717
OB01G51580
Oryza brachyantha
OB01G51580
N
0.717
ARF7
Oryza sativa
OS02G0557200
N
0.717
OMERI02G20310
Oryza meridionalis
OMERI02G20310
N
0.717
ORUFI02G21640
Oryza rufipogon
ORUFI02G21640
N
0.717
ONIVA02G22590
Oryza nivara
ONIVA02G22590
N
0.717
ORGLA02G0176700
Oryza glaberrima
ORGLA02G0176700
N
0.717
OPUNC02G18520
Oryza punctata
OPUNC02G18520
N
0.717
GSMUA_Achr2G19760_001
Musa acuminata
GSMUA_Achr2G19760_001
N
0.710