VRN1 (Arabidopsis thaliana)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 AT3G18990 T018434_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of histone H3

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00		 Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a		 (Direct) (Direct)
VRN1
M06705_2.00		 Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G18990.1 B3 5 98
AT3G18990.1 B3 244 338
AT3G18990.2 B3 5 98
AT3G18990.2 B3 244 338

Links

Other B3 family TFs
Other Arabidopsis thaliana TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 1.000
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.995
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.995
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.995
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.995
Bra037544 Brassica rapa Bra037544 I 0.947
Bo1g115980 Brassica oleracea Bo1g115980 I 0.947
Bo5g116790 Brassica oleracea Bo5g116790 I 0.947
Bra022376 Brassica rapa Bra022376 I 0.921
Bo3g071890 Brassica oleracea Bo3g071890 I 0.895
Bra001729 Brassica rapa Bra001729 I 0.853
TCM_006971 Theobroma cacao TCM_006971 I 0.819
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.798
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.778
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.772
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.772
POPTR_0009s11170 Populus trichocarpa POPTR_0009s11170 I 0.730
SapurV1A.2089s0010 Salix purpurea SapurV1A.2089s0010 I 0.725
PK10791.1 Cannabis sativa PK10791.1 I 0.725
evm.TU.supercontig_62.76 Carica papaya evm.TU.supercontig_62.76 I 0.725
SapurV1A.0090s0340 Salix purpurea SapurV1A.0090s0340 I 0.720
POPTR_0004s15400 Populus trichocarpa POPTR_0004s15400 I 0.720
orange1.1g016655m.g Citrus sinensis orange1.1g016655m.g I 0.720
SapurV1A.0979s0040 Salix purpurea SapurV1A.0979s0040 I 0.720
Ciclev10028642m.g Citrus clementina Ciclev10028642m.g I 0.720
gene31955-v1.0-hybrid Fragaria vesca gene31955-v1.0-hybrid I 0.714
cassava29880.valid.m1 Manihot esculenta cassava29880.valid.m1 I 0.709
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I 0.709
29851.m002498 Ricinus communis 29851.m002498 I 0.709
chr2.CM0308.470.nd Lotus japonicus chr2.CM0308.470.nd I 0.704
chr2.CM0262.200.nc Lotus japonicus chr2.CM0262.200.nc I 0.704