VDD (Arabidopsis thaliana)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 AT5G18000 T018469_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes VERDANDI (VDD), a putative transcription factor belonging to the reproductive meristem (REM) family. VDD is a direct target of the MADS domain ovule identity complex. Mutation in VDD affects embryo sac differentiation.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G18000.1 B3 20 115
AT5G18000.1 B3 217 307
AT5G18000.2 B3 1 80
AT5G18000.2 B3 182 272

Links

Other B3 family TFs
Other Arabidopsis thaliana TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.6254s0043 Capsella grandiflora Cagra.6254s0043 N 0.870
VDD Arabidopsis lyrata fgenesh1_pg.C_scaffold_6001499 N 0.870
Carubv10002417m.g Capsella rubella Carubv10002417m.g N 0.870
Bostr.26527s0412 Boechera stricta Bostr.26527s0412 N 0.784