AT5G60130 (Arabidopsis thaliana)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 AT5G60130 T018483_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and, together with ARF7, is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G60130
M06712_2.00
Arabidopsis thaliana
WTTTBCTTNDNWTTTBCTT

AAGVAAAWNHNAAGVAAAW
Dap-seq
OMalley et al.(2016)
AT5G60130_col_a
(Direct) (Direct)
AT5G60130
M06713_2.00
Arabidopsis thaliana
DTTTTSCTTAWNTTTTGCTTA

TAAGCAAAANWTAAGSAAAAH
Dap-seq
OMalley et al.(2016)
AT5G60130_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G60130.1 B3 1 85
AT5G60130.1 B3 202 296
AT5G60130.2 B3 14 111
AT5G60130.2 B3 202 296
AT5G60130.3 B3 1 85
AT5G60130.3 B3 202 296
AT5G60130.4 B3 11 108
AT5G60130.4 B3 225 319
AT5G60130.5 B3 14 111

Links

Other B3 family TFs
Other Arabidopsis thaliana TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scaffold_802655.1 Arabidopsis lyrata scaffold_802655.1 I 0.840
Bostr.7867s0314 Boechera stricta Bostr.7867s0314 I 0.785
Bostr.25219s0556 Boechera stricta Bostr.25219s0556 I 0.733