Bo00853s090 (Brassica oleracea)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bo00853s090 T018577_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NGA4
M06707_2.00
Arabidopsis thaliana
NHHBDYCAGGTRNHWH

DWDNYACCTGRHVDDN
Dap-seq
OMalley et al.(2016)
NGA4_col_a
0.821 0.821
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo00853s090.1 B3 36 133

Links

Other B3 family TFs
Other Brassica oleracea TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra008552 Brassica rapa Bra008552 I 0.968
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.857
NGA4 Arabidopsis lyrata scaffold_604140.1 I 0.853
Thhalv10028783m.g Eutrema salsugineum Thhalv10028783m.g I 0.842
NGA4 Arabidopsis thaliana AT4G01500 D 0.821
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.821
Cagra.23502s0003 Capsella grandiflora Cagra.23502s0003 I 0.789
Carubv10001406m.g Capsella rubella Carubv10001406m.g I 0.789
Bra037417 Brassica rapa Bra037417 N 0.742
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.730
Bo9g004050 Brassica oleracea Bo9g004050 N 0.726
Cagra.1968s0048 Capsella grandiflora Cagra.1968s0048 N 0.716
NGA3 Arabidopsis lyrata fgenesh2_kg.1__134__AT1G01030.1 N 0.716
Bo5g002790 Brassica oleracea Bo5g002790 N 0.716
Thhalv10008068m.g Eutrema salsugineum Thhalv10008068m.g N 0.716
Carubv10009540m.g Capsella rubella Carubv10009540m.g N 0.716
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.716
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.716
Solyc08g013690.1 Solanum lycopersicum Solyc08g013690.1 I 0.716
NGA3 Arabidopsis thaliana AT1G01030 N 0.716
Solyc08g013700.1 Solanum lycopersicum Solyc08g013700.1 I 0.716
Ca_01368 Cicer arietinum Ca_01368 I 0.716
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.714
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.705
Bo3g001110 Brassica oleracea Bo3g001110 N 0.705
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.705
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.705
Pm028725 Prunus mume Pm028725 N 0.705
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.705