Bra001729 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra001729 T018773_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.853 0.853
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.853 0.853
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001729.1-P B3 260 348
Bra001729.1-P B3 480 574

Links

Other B3 family TFs
Other Brassica rapa TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g071890 Brassica oleracea Bo3g071890 I 0.895
Bo1g115980 Brassica oleracea Bo1g115980 I 0.891
Bra022376 Brassica rapa Bra022376 I 0.880
Bo5g116790 Brassica oleracea Bo5g116790 I 0.873
Bra037544 Brassica rapa Bra037544 I 0.862
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.853
VRN1 Arabidopsis thaliana AT3G18990 D 0.853
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.853
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.848
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.848
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.848
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.728
TCM_006971 Theobroma cacao TCM_006971 I 0.723
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.714
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.712
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.701