Bra025720 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra025720 T018893_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF8
M01697_2.00
Arabidopsis thaliana
NHTGTCGGN

NCCGACADN
PBM
Weirauch et al.(2014)
pTH8661
0.796 0.796
ARF5
M06701_2.00
Arabidopsis thaliana
WYTTGTCGGN

NCCGACAARW
Dap-seq
OMalley et al.(2016)
MP_col
0.786 0.786
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025720.1-P B3 126 228

Links

Other B3 family TFs
Other Brassica rapa TFs

569 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
FAR1 Arabidopsis thaliana AT4G15090 D 0.000
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.000
Bo6g054750 Brassica oleracea Bo6g054750 I 0.000
Bra040696 Brassica rapa Bra040696 I 0.000
PK04639.1 Cannabis sativa PK04639.1 I 0.000
PK08903.1 Cannabis sativa PK08903.1 I 0.000
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.000
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.000
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.000
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.000
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.000
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.000
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.000
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.000
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.000
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.000
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.000
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.000
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.000
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.000
MDP0000286803 Malus domestica MDP0000286803 I 0.000
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.000
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.000
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.000
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.000
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.000
mgf008053m Mimulus guttatus mgf008053m I 0.000
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.000
Pm014859 Prunus mume Pm014859 I 0.000
Pm014858 Prunus mume Pm014858 I 0.000
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.000
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.000
30106.m000672 Ricinus communis 30106.m000672 I 0.000
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.000
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.000
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.000
TCM_013043 Theobroma cacao TCM_013043 I 0.000
TCM_002030 Theobroma cacao TCM_002030 I 0.000
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.000
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.000