Bra025779 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra025779 T018895_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF2
M06714_2.00
Arabidopsis thaliana
NHTGTCKSHD

HDSMGACADN
Dap-seq
OMalley et al.(2016)
ARF2_col_v31
0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025779.1-P B3 94 151

Links

Other B3 family TFs
Other Brassica rapa TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30068.m002516 Ricinus communis 30068.m002516 I 0.723
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.745
Aquca_003_00899 Aquilegia coerulea Aquca_003_00899 I 0.766
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.723
ARF1 Oryza sativa OS01G0236300 I 0.745
ARF1 Vitis vinifera VIT_12s0035g01800 I 0.745
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.787
ARF2 Arabidopsis lyrata scaffold_802850.1 I 0.766
ARF2 Arabidopsis thaliana AT5G62000 D 0.766
ARF4 Oryza sativa OS01G0927600 I 0.745
ARF6 Oryza sativa OS02G0164900 I 0.702
ARF6 Oryza indica BGIOSGA007604 I 0.702
ARF9 Oryza sativa OS04G0442000 I 0.809
BGIOSGA003093 Oryza indica BGIOSGA003093 I 0.745
BGIOSGA005099 Oryza indica BGIOSGA005099 I 0.745
BGIOSGA016467 Oryza indica BGIOSGA016467 I 0.809
Bo2g161810 Brassica oleracea Bo2g161810 I 0.766
Bo3g108130 Brassica oleracea Bo3g108130 I 0.745
Bo9g014770 Brassica oleracea Bo9g014770 I 0.766
Bostr.26833s0038 Boechera stricta Bostr.26833s0038 I 0.766
Bra010048 Brassica rapa Bra010048 I 0.745
Bra018098 Brassica rapa Bra018098 I 1.000
Bra029293 Brassica rapa Bra029293 I 0.766
Bra035910 Brassica rapa Bra035910 I 0.766
BRADI2G59480 Brachypodium distachyon BRADI2G59480 I 0.766
BRADI3G04920 Brachypodium distachyon BRADI3G04920 I 0.702
BRADI3G45880 Brachypodium distachyon BRADI3G45880 I 0.723
BRADI4G01730 Brachypodium distachyon BRADI4G01730 I 0.702
Cagra.4553s0009 Capsella grandiflora Cagra.4553s0009 I 0.766
Carubv10025860m.g Capsella rubella Carubv10025860m.g I 0.766
Ca_00010 Cicer arietinum Ca_00010 I 0.702
Ca_05681 Cicer arietinum Ca_05681 I 0.766
Ca_14590 Cicer arietinum Ca_14590 I 0.702
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.766
Ciclev10003317m.g Citrus clementina Ciclev10003317m.g I 0.723
Ciclev10019174m.g Citrus clementina Ciclev10019174m.g I 0.766
Cla011540 Citrullus lanatus Cla011540 I 0.766
Cla013021 Citrullus lanatus Cla013021 I 0.702
Cla019614 Citrullus lanatus Cla019614 I 0.766
Cucsa.114840 Cucumis sativus Cucsa.114840 I 0.702
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.787
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.787
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.745
evm.TU.supercontig_15.1 Carica papaya evm.TU.supercontig_15.1 I 0.702
evm.TU.supercontig_173.22 Carica papaya evm.TU.supercontig_173.22 I 0.723
e_gw1.64.107.1 Physcomitrella patens e_gw1.64.107.1 I 0.702
F775_09991 Aegilops tauschii F775_09991 I 0.702
F775_21871 Aegilops tauschii F775_21871 I 0.702
F775_31280 Aegilops tauschii F775_31280 I 0.787
F775_32662 Aegilops tauschii F775_32662 I 0.766
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.787
gene25123-v1.0-hybrid Fragaria vesca gene25123-v1.0-hybrid I 0.702
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.702
GLYMA03G36710 Glycine max GLYMA03G36710 N 0.723
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.766
GLYMA05G38540 Glycine max GLYMA05G38540 I 0.787
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.766
GLYMA08G01100 Glycine max GLYMA08G01100 I 0.766
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.787
Gorai.007G109500 Gossypium raimondii Gorai.007G109500 I 0.766
Gorai.008G097200 Gossypium raimondii Gorai.008G097200 I 0.723
Gorai.010G091300 Gossypium raimondii Gorai.010G091300 I 0.702
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.787
GRMZM2G081158 Zea mays GRMZM2G081158 I 0.702
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.787
GRMZM2G352159 Zea mays GRMZM2G352159 I 0.787
GRMZM2G475263 Zea mays GRMZM2G475263 N 0.745
GRMZM2G702026 Zea mays GRMZM2G702026 I 0.745
GSMUA_Achr10G15100_001 Musa acuminata GSMUA_Achr10G15100_001 I 0.702
GSMUA_Achr10G16170_001 Musa acuminata GSMUA_Achr10G16170_001 I 0.766
GSMUA_Achr10G26140_001 Musa acuminata GSMUA_Achr10G26140_001 I 0.702
GSMUA_Achr11G25770_001 Musa acuminata GSMUA_Achr11G25770_001 I 0.723
GSMUA_Achr5G00590_001 Musa acuminata GSMUA_Achr5G00590_001 I 0.723
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.766
GSMUA_Achr6G12780_001 Musa acuminata GSMUA_Achr6G12780_001 I 0.830
GSMUA_Achr6G29070_001 Musa acuminata GSMUA_Achr6G29070_001 I 0.766
GSMUA_Achr8G13630_001 Musa acuminata GSMUA_Achr8G13630_001 I 0.702
LjSGA_059323.1 Lotus japonicus LjSGA_059323.1 I 0.702
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.766
LPERR02G04280 Leersia perrieri LPERR02G04280 I 0.702
Lus10032541.g Linum usitatissimum Lus10032541.g I 0.745
Lus10043200.g Linum usitatissimum Lus10043200.g I 0.745
MDP0000139073 Malus domestica MDP0000139073 I 0.702
MDP0000258032 Malus domestica MDP0000258032 I 0.787
MDP0000310875 Malus domestica MDP0000310875 I 0.766
mgf003543m Mimulus guttatus mgf003543m I 0.702
mgf005961m Mimulus guttatus mgf005961m I 0.702
mgf006511m Mimulus guttatus mgf006511m I 0.787
mgf015308m Mimulus guttatus mgf015308m I 0.787
mgf020855m Mimulus guttatus mgf020855m I 0.787
MLOC_58330 Hordeum vulgare MLOC_58330 I 0.702
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.809
MLOC_65945 Hordeum vulgare MLOC_65945 I 0.702
MLOC_66152 Hordeum vulgare MLOC_66152 I 0.702
MLOC_68907 Hordeum vulgare MLOC_68907 I 0.766
MTR_4g021580 Medicago truncatula MTR_4g021580 I 0.723
MTR_4g124900 Medicago truncatula MTR_4g124900 I 0.702
OB01G18840 Oryza brachyantha OB01G18840 N 0.723
OB01G35190 Oryza brachyantha OB01G35190 I 0.766
OB12G20020 Oryza brachyantha OB12G20020 I 0.787
OB12G25550 Oryza brachyantha OB12G25550 I 0.702
OBART01G08640 Oryza barthii OBART01G08640 I 0.745
OBART01G42570 Oryza barthii OBART01G42570 I 0.745
OBART02G04960 Oryza barthii OBART02G04960 I 0.702
OGLUM01G09880 Oryza glumaepatula OGLUM01G09880 I 0.745
OGLUM02G04770 Oryza glumaepatula OGLUM02G04770 I 0.702
OGLUM04G13380 Oryza glumaepatula OGLUM04G13380 I 0.809
OLONG_005875 Oryza longistaminata OLONG_005875 I 0.745
OLONG_020465 Oryza longistaminata OLONG_020465 I 0.702
OMERI01G08660 Oryza meridionalis OMERI01G08660 I 0.745
OMERI01G39560 Oryza meridionalis OMERI01G39560 I 0.745
OMERI02G05780 Oryza meridionalis OMERI02G05780 I 0.702
OMERI04G12260 Oryza meridionalis OMERI04G12260 I 0.809
ONIVA01G48620 Oryza nivara ONIVA01G48620 I 0.745
ONIVA02G05150 Oryza nivara ONIVA02G05150 I 0.702
ONIVA04G11850 Oryza nivara ONIVA04G11850 I 0.809
OPUNC01G08500 Oryza punctata OPUNC01G08500 I 0.745
OPUNC02G04120 Oryza punctata OPUNC02G04120 I 0.702
OPUNC04G11520 Oryza punctata OPUNC04G11520 I 0.809
orange1.1g005368m.g Citrus sinensis orange1.1g005368m.g I 0.766
ORGLA01G0077700 Oryza glaberrima ORGLA01G0077700 I 0.745
ORGLA01G0363100 Oryza glaberrima ORGLA01G0363100 I 0.745
ORGLA02G0045800 Oryza glaberrima ORGLA02G0045800 I 0.702
ORGLA04G0107000 Oryza glaberrima ORGLA04G0107000 I 0.809
ORUFI01G09450 Oryza rufipogon ORUFI01G09450 I 0.745
ORUFI01G45980 Oryza rufipogon ORUFI01G45980 I 0.745
ORUFI02G05060 Oryza rufipogon ORUFI02G05060 I 0.702
ORUFI04G14900 Oryza rufipogon ORUFI04G14900 I 0.809
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I 0.745
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.787
Pavir.Ea00026 Panicum virgatum Pavir.Ea00026 I 0.745
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.787
Pavir.Eb02716 Panicum virgatum Pavir.Eb02716 I 0.745
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.787
Pavir.Ga01750 Panicum virgatum Pavir.Ga01750 I 0.809
Pavir.Gb01617 Panicum virgatum Pavir.Gb01617 I 0.809
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.787
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.766
PGSC0003DMG400014452 Solanum tuberosum PGSC0003DMG400014452 I 0.766
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.766
PK02218.1 Cannabis sativa PK02218.1 I 0.702
PK12669.1 Cannabis sativa PK12669.1 I 0.745
PK16974.1 Cannabis sativa PK16974.1 I 0.787
Pm024588 Prunus mume Pm024588 I 0.766
POPTR_0001s10900 Populus trichocarpa POPTR_0001s10900 I 0.723
POPTR_0004s23770 Populus trichocarpa POPTR_0004s23770 I 0.745
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.766
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.787
PRUPE_ppa001392mg Prunus persica PRUPE_ppa001392mg I 0.766
SapurV1A.0035s0230 Salix purpurea SapurV1A.0035s0230 I 0.723
SapurV1A.0340s0160 Salix purpurea SapurV1A.0340s0160 I 0.894
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.745
SapurV1A.1529s0070 Salix purpurea SapurV1A.1529s0070 I 0.702
Sb03g000530 Sorghum bicolor Sb03g000530 I 0.745
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.787
Sb06g017490 Sorghum bicolor Sb06g017490 I 0.830
Sb08g021460 Sorghum bicolor Sb08g021460 I 0.702
Sb10g027220 Sorghum bicolor Sb10g027220 I 0.702
Si000340m.g Setaria italica Si000340m.g I 0.787
Si004598m.g Setaria italica Si004598m.g I 0.745
Si009558m.g Setaria italica Si009558m.g I 0.809
Si016562m.g Setaria italica Si016562m.g I 0.745
Si021216m.g Setaria italica Si021216m.g I 0.787
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.787
Solyc05g047460.2 Solanum lycopersicum Solyc05g047460.2 I 0.702
Solyc12g042070.1 Solanum lycopersicum Solyc12g042070.1 I 0.766
TCM_016500 Theobroma cacao TCM_016500 I 0.702
TCM_027113 Theobroma cacao TCM_027113 I 0.745
Thhalv10003641m.g Eutrema salsugineum Thhalv10003641m.g I 0.766
TRAES3BF001100080CFD_g Triticum aestivum TRAES3BF001100080CFD_g I 0.766
TRAES3BF007300580CFD_g Triticum aestivum TRAES3BF007300580CFD_g I 0.702
TRAES3BF097400050CFD_g Triticum aestivum TRAES3BF097400050CFD_g I 0.723
Traes_6DS_F95C12EBB Triticum aestivum Traes_6DS_F95C12EBB I 0.702
Traes_7BL_66296695F Triticum aestivum Traes_7BL_66296695F I 0.702
Traes_7DL_C89614A4D Triticum aestivum Traes_7DL_C89614A4D I 0.702
TRIUR3_17755 Triticum urartu TRIUR3_17755 I 0.766
TRIUR3_28704 Triticum urartu TRIUR3_28704 I 0.702
VIT_02s0025g01740 Vitis vinifera VIT_02s0025g01740 I 0.702