CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra025779
(
Brassica rapa
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02362 (B3)
IPR003340
Bra025779
T018895_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF2
M06714_2.00
Arabidopsis thaliana
NHTGTCKSHD
HDSMGACADN
Dap-seq
OMalley et al.(2016)
ARF2_col_v31
0.766
0.766
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra025779.1-P
B3
94
151
FCKTLTASDTSTHGGFSVLSRHADECLPPLDMSLQPPTQELVAKKLNGNEWRXXXXXX
Links
Other
B3
family TFs
Other
Brassica rapa
TFs
178 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000013989
Ailuropoda melanoleuca
ENSAMEG00000013989
N
0.000
ENSCPOG00000008991
Cavia porcellus
ENSCPOG00000008991
N
0.000
ENSCSAG00000017237
Chlorocebus sabaeus
ENSCSAG00000017237
N
0.000
ENSMICG00000015919
Microcebus murinus
ENSMICG00000015919
N
0.000
ENSMPUG00000015626
Mustela putorius furo
ENSMPUG00000015626
N
0.000
ENSNLEG00000011329
Nomascus leucogenys
ENSNLEG00000011329
N
0.000
ENSOARG00000013148
Ovis aries
ENSOARG00000013148
N
0.000
ENSP00000325123
Macaca fascicularis
ENSP00000325123
N
0.000
ENSPANG00000000536
Papio anubis
ENSPANG00000000536
N
0.000
ENSPPYG00000006877
Pongo abelii
ENSPPYG00000006877
N
0.000
ENSSHAG00000015790
Sarcophilus harrisii
ENSSHAG00000015790
N
0.000
ENSSTOG00000001741
Ictidomys tridecemlineatus
ENSSTOG00000001741
N
0.000
ENSTSYG00000009785
Tarsius syrichta
ENSTSYG00000009785
N
0.000
Myotis_brandtii_ZSCAN2_10013218
Myotis brandtii
Myotis_brandtii_ZSCAN2_10013218
N
0.000
ZSCAN2
Canis familiaris
ENSCAFG00000012858
N
0.000
ZSCAN2
Felis catus
ENSFCAG00000025011
N
0.000
ZSCAN2
Pan troglodytes
ENSPTRG00000007400
N
0.000
Zscan2
Rattus norvegicus
ENSRNOG00000022164
N
0.000
ZSCAN2
Sorex araneus
ENSSARG00000014372
N
0.000
ZSCAN2
Erinaceus europaeus
ENSEEUG00000006493
N
0.000
ZSCAN2
Equus caballus
ENSECAG00000022470
N
0.000
ZSCAN2
Dasypus novemcinctus
ENSDNOG00000033566
N
0.000
ZSCAN2
Choloepus hoffmanni
ENSCHOG00000006276
N
0.000
ZSCAN2
Homo sapiens
ENSG00000176371
N
0.000
ZSCAN2
Ochotona princeps
ENSOPRG00000002700
N
0.000
ZSCAN2
Macaca mulatta
ENSMMUG00000022080
N
0.000
ZSCAN2
Monodelphis domestica
ENSMODG00000019354
N
0.000
ZSCAN2
Bos taurus
ENSBTAG00000001385
N
0.000
Zscan2
Mus musculus
ENSMUSG00000038797
N
0.000
ZSCAN2
Loxodonta africana
ENSLAFG00000001521
N
0.000
ZSCAN2
Gorilla gorilla
ENSGGOG00000014609
N
0.000
ZSCAN2
Oryctolagus cuniculus
ENSOCUG00000007308
N
0.000
ZSCAN2
Otolemur garnettii
ENSOGAG00000007268
N
0.000
ZSCAN2
Callithrix jacchus
ENSCJAG00000016119
N
0.000