Bra032953 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra032953 T018920_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FUS3
M06706_2.00
Arabidopsis thaliana
WNHWTGCATGYDHDW

WHDHRCATGCAWDNW
Dap-seq
OMalley et al.(2016)
FUS3_col_a
0.949 0.949
FUS3
M09773_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FUS3_Q2
0.949 0.949
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra032953.1-P B3 95 197

Links

Other B3 family TFs
Other Brassica rapa TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo00285s530 Brassica oleracea Bo00285s530 I 1.000
Bostr.0556s0351 Boechera stricta Bostr.0556s0351 I 0.949
FUS3 Arabidopsis thaliana AT3G26790 D 0.949
Thhalv10005481m.g Eutrema salsugineum Thhalv10005481m.g I 0.939
FUS3 Arabidopsis lyrata fgenesh2_kg.5__447__AT3G26790.1 I 0.939
Cagra.1841s0002 Capsella grandiflora Cagra.1841s0002 I 0.919
Carubv10019353m.g Capsella rubella Carubv10019353m.g I 0.919
Ciclev10016085m.g Citrus clementina Ciclev10016085m.g I 0.888
LjSGA_037319.1 Lotus japonicus LjSGA_037319.1 I 0.882
Pm016099 Prunus mume Pm016099 I 0.878
orange1.1g041864m.g Citrus sinensis orange1.1g041864m.g I 0.869
PRUPE_ppa021307mg Prunus persica PRUPE_ppa021307mg I 0.867
Cla009252 Citrullus lanatus Cla009252 I 0.857
POPTR_0017s08820 Populus trichocarpa POPTR_0017s08820 I 0.857
GLYMA19G27336 Glycine max GLYMA19G27336 I 0.847
TCM_017321 Theobroma cacao TCM_017321 I 0.847
30131.m006860 Ricinus communis 30131.m006860 I 0.838
GLYMA16G05480 Glycine max GLYMA16G05480 I 0.837
Lus10041521.g Linum usitatissimum Lus10041521.g I 0.837
Gorai.001G273500 Gossypium raimondii Gorai.001G273500 I 0.837
MDP0000268649 Malus domestica MDP0000268649 I 0.836
POPTR_0001s32990 Populus trichocarpa POPTR_0001s32990 I 0.833
Lus10012572.g Linum usitatissimum Lus10012572.g I 0.827
cassava11393.m1 Manihot esculenta cassava11393.m1 I 0.814
Ca_05976 Cicer arietinum Ca_05976 I 0.806
MTR_7g083700 Medicago truncatula MTR_7g083700 I 0.804
cassava14836.m1 Manihot esculenta cassava14836.m1 I 0.793
Bo7g083910 Brassica oleracea Bo7g083910 I 0.768
evm.TU.supercontig_70.84 Carica papaya evm.TU.supercontig_70.84 I 0.762
FUS3 Vitis vinifera VIT_14s0068g01290 I 0.737